PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678450042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TCP | ||||||||
Protein Properties | Length: 431aa MW: 46846.2 Da PI: 7.1406 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.2 | 1.5e-34 | 34 | 141 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssa.......seceaesssssasns 85 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ + ++c ++ ++++ 678450042 34 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAQLppwhpasqtM---NferdelqKKC---EEDQQQQ-- 125 79**************************************************************7655442220...12211111222...1111111.. PP TCP 86 ssg..............k 89 + + 678450042 126 --KeeltvhhgkpvipgA 141 ..1122233333444441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.7E-33 | 34 | 145 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.033 | 36 | 94 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MEESSNHRAV LPLSRLGPRS EIVEVQGGHI VRSTGRKDRH SKVCTAKGPR DRRVRLAAHT 60 AIQFYDVQDR LGYDRPSKAV DWLIKKAKTA IDELAQLPPW HPASQTMNFE RDELQKKCEE 120 DQQQQKEELT VHHGKPVIPG ASGKKPMIMV GTEDEVHNNP SSQNSGFLPS SLDSDAIADT 180 IKSFFPMGAS TEASSSSMQY RSFQASDLLS GSSSNSQDLR LSLQSFQDPI LLHHQPSEHS 240 HQQGHSLLGF DGTPNWAEHH QQAVAAAAAA ELSRFQRLTA WNSGGGTSNI GNGGAAPGFL 300 FNSQQPALQQ LSGHTHFSSQ RGPLQSSNSP SIRAWMDASG VAASVSSSDH SQHQQLHHQL 360 LPSYIPMYPS SMQGNGFASG AAVVRLIRFL PLSDTHLTLP SSVKEGLLLL EIGSSMSAAR 420 IIQIPTSVED T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-20 | 41 | 94 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 8e-20 | 41 | 94 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678450042 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082737.1 | 1e-160 | transcription factor TCP4-like | ||||
Refseq | XP_011082738.1 | 1e-160 | transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 6e-82 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2G9HTM9 | 1e-145 | A0A2G9HTM9_9LAMI; Uncharacterized protein | ||||
STRING | XP_009785152.1 | 1e-114 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3207 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-65 | TCP family protein |