PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678450039 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TCP | ||||||||
Protein Properties | Length: 413aa MW: 44900.1 Da PI: 6.7516 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.7 | 1.5e-36 | 32 | 146 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnsss 87 a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ + +++ce+e++++++++ + 678450039 32 ATGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAQLppwhptgqnvnfeRDEEHNKCEEEEQQQQQQHGEL 131 589**************************************************************99998888887765555578855555555553322 PP TCP 88 g.............k 89 678450039 132 VaseasskrqvmmaG 146 244444443333321 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.5E-34 | 33 | 150 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.033 | 35 | 93 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MGDSSNFTAP PPSRLAPRGE IVEVQGGHIV RATGRKDRHS KVCTAKGPRD RRVRLAAHTA 60 IQFYDVQDRL GYDRPSKAVD WLIKKAKTAI DELAQLPPWH PTGQNVNFER DEEHNKCEEE 120 EQQQQQQHGE LVASEASSKR QVMMAGGEDG MHKNPNSQNS SFLHSSLHSD AIADTMKSLF 180 PMGASAEASS SSMQFQGFQA SDLLSGNSTN SQDLRLSLQS FQDPILLHHQ PPEQAHQRAY 240 SLLGFDGTAN WAEHHQHAAA AATAAAELSR FQRLTAWNPG GEDSNNGNGG AAQGFLFNSQ 300 QPTLQQLSGH THFSSQRGPL QSSNTPSVRA WMDPSGVATA IASSHHNQHQ QQHQHLLLPT 360 VVPIYPSSTQ GIGYASGSGG FSGFPIPARI HGDVEEHDGY SDKPSSVSSD SRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 40 | 93 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 40 | 93 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678450039 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082737.1 | 0.0 | transcription factor TCP4-like | ||||
Refseq | XP_011082738.1 | 0.0 | transcription factor TCP4-like | ||||
TrEMBL | A0A2G9HTM9 | 1e-164 | A0A2G9HTM9_9LAMI; Uncharacterized protein | ||||
STRING | XP_009785152.1 | 1e-131 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3207 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 4e-73 | TCP family protein |