PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678450009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | CPP | ||||||||
Protein Properties | Length: 565aa MW: 61405.3 Da PI: 6.8084 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 23.5 | 1.1e-07 | 108 | 133 | 16 | 42 |
TCR 16 kYCeCfaagkkCseeCkCedCkNkeek 42 +YCeCfa+g +C+ C+C +C+N+ e+ 678450009 108 MYCECFASGIYCDG-CNCVNCHNNVEN 133 6*************.********9875 PP | |||||||
2 | TCR | 51 | 2.9e-16 | 176 | 215 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e 678450009 176 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 215 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 30.403 | 97 | 216 | IPR005172 | CRC domain |
SMART | SM01114 | 0.0022 | 108 | 133 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.0E-5 | 108 | 130 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 176 | 217 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-12 | 179 | 214 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MDQREGGELP PNNPPPSVSE SYSTAVVDFP ARKLVRQLDF TDISSGPSAV EQQQTAKPIQ 60 PPPQSPIPQM AKPIQSTKLP PQQMPFMGIQ NPSQLPGPLN NSVTRPFMYC ECFASGIYCD 120 GCNCVNCHNN VENEAARREA VGATLERNPN AFRPKIASSP HGARDSRDED GLATGKHNKG 180 CHCKKSGCLK KYCECFQANI LCSENCKCMD CKNFEGSEER QALFHGDHAN MSFIQQAANA 240 AITGAIGSSG FGTLPYNKKR KGQDLCFGST LKDPVSKLGQ FQQASHNDRA SIPSSSTPAV 300 RPGGIPGRGP SKFAYRSLLA DIIQPQDLKE LCSVLVVYSG QTAKMLAVKK KKDHLPISVE 360 LYVADGVLLM VTDERDVEKQ AENLRAAPTS ILQTSEPSTH EKTPNDASSF DDQAEKTGPE 420 EFYSDGADSS KGRPVSPSTA ALMCDEKDAM FTASPKRLEV DNNMSSQLPL ERGVTKSYAE 480 QERIVLTKFR ECLNRLITLG EIKETRYSSL LQTESANEKE LTSSLPVSDS KDVQPLSNGL 540 ANLPISLRTA AVAVSIASFL ENKHI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-26 | 108 | 225 | 24 | 132 | Protein lin-54 homolog |
5fd3_B | 2e-26 | 108 | 225 | 24 | 132 | Protein lin-54 homolog |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678450009 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093606.1 | 0.0 | protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 1e-145 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A2G9GSN4 | 0.0 | A0A2G9GSN4_9LAMI; Metallothionein-like protein | ||||
STRING | Gorai.001G006500.1 | 1e-178 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2401 | 24 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-134 | Tesmin/TSO1-like CXC domain-containing protein |