PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678449798

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

GRAS

Protein Properties

Length: 745aa MW: 84309.3 Da PI: 5.521

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678449798	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	325.2	1.3e-99	371	742	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cA+ v++gd++ a++ L++++++ +g + + + f +AL+arl ++++ely++ ++ + se l+++k++ ++P+ k+ l aN+ 678449798 371 LRSLLISCAQSVAAGDHRTAEEQLKQIEQHLPTNGAAHNGVGRLFCRALRARLGGTGNELYASQIQRKLT---ASELLKIYKVYLSTCPFKKLPVLFANE 467 689**************************************************999999776666665...99********************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +I a+++++++Hi+Df+i +G++Wp+L+q+L++Rp+gpp+lRiTg++ p+ g +e++eetg+ L+kf+e++gv++e+++++++++ed++le+L++ + 678449798 468 MIISAASEASTLHIVDFGILYGFHWPTLIQQLSQRPGGPPKLRITGIELPQRGfrPAERVEETGRHLKKFCERFGVSLEYHPIASQHWEDIKLEDLKIVK 567 ***********************************************99**************************999********** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 gE+l n+ ++l r+ldesv+ +s+rd++L+++++++P v+v + + ++ns+ Fl+rf eal ++++lfd+l + lpr + + + +e + ++ nvv 678449798 568 GEVLCANCLFRLGRFLDESVAPDSPRDKLLRMIRKMKPSVFVNTVTNGSYNSPFFLTRFREALFHFTMLFDMLGTILPRGNPDLNEFIQEHYALDVINVV 667 *****************************************************************************7777766666999** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 acegaer+er et+++W++r +aGFkp pl+e+++k+ ++ + ++ + +++ +++++gWk+r L + S+W 678449798 668 ACEGAERVERPETYKQWKSRHLAAGFKPHPLQEETMKKLRSRSKATSHIDFLFDKDGNWMLQGWKGRILSASSCW 742 *******************************************777*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.048	345	723	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.6E-97	371	742	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
MDPQLRQFSD AANEFEFVYG DFFTSQTQSQ YLSTDVHHHM DFNVSDIPFL PLSPDPENCS 60 SPATASCETE SADDQDPGEM LKYLNMYLVE ENSDDMINTF HGPLVLQATE KSLYELIGQE 120 YPPLHMNIEA YPDQSTDTPE TTIDSSSGCT SGFCDDVTSF VDFQWVVDPS ENNSTLKQDH 180 RNGVSPNLFM QKKLQSLSIP VDDSEGHTDR TMLLHDMFNN EESILQFKRG MEAASKFLPT 240 DNKLIIDLDK YMLPEKSEDV MKVGVVKIEK NNIDGFELPL RGKRHHYPRD GDSENLERSI 300 KQSAVSVEDV DLSEYLERTL CCDDDEVLEL STKEAKLPGS KKGLPQGALA SHSSRRSRAK 360 KSDNNGDVVD LRSLLISCAQ SVAAGDHRTA EEQLKQIEQH LPTNGAAHNG VGRLFCRALR 420 ARLGGTGNEL YASQIQRKLT ASELLKIYKV YLSTCPFKKL PVLFANEMII SAASEASTLH 480 IVDFGILYGF HWPTLIQQLS QRPGGPPKLR ITGIELPQRG FRPAERVEET GRHLKKFCER 540 FGVSLEYHPI ASQHWEDIKL EDLKIVKGEV LCANCLFRLG RFLDESVAPD SPRDKLLRMI 600 RKMKPSVFVN TVTNGSYNSP FFLTRFREAL FHFTMLFDML GTILPRGNPD LNEFIQEHYA 660 LDVINVVACE GAERVERPET YKQWKSRHLA AGFKPHPLQE ETMKKLRSRS KATSHIDFLF 720 DKDGNWMLQG WKGRILSASS CWVSD

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

MDPQLRQFSD AANEFEFVYG DFFTSQTQSQ YLSTDVHHHM DFNVSDIPFL PLSPDPENCS  60
SPATASCETE SADDQDPGEM LKYLNMYLVE ENSDDMINTF HGPLVLQATE KSLYELIGQE  120
YPPLHMNIEA YPDQSTDTPE TTIDSSSGCT SGFCDDVTSF VDFQWVVDPS ENNSTLKQDH  180
RNGVSPNLFM QKKLQSLSIP VDDSEGHTDR TMLLHDMFNN EESILQFKRG MEAASKFLPT  240
DNKLIIDLDK YMLPEKSEDV MKVGVVKIEK NNIDGFELPL RGKRHHYPRD GDSENLERSI  300
KQSAVSVEDV DLSEYLERTL CCDDDEVLEL STKEAKLPGS KKGLPQGALA SHSSRRSRAK  360
KSDNNGDVVD LRSLLISCAQ SVAAGDHRTA EEQLKQIEQH LPTNGAAHNG VGRLFCRALR  420
ARLGGTGNEL YASQIQRKLT ASELLKIYKV YLSTCPFKKL PVLFANEMII SAASEASTLH  480
IVDFGILYGF HWPTLIQQLS QRPGGPPKLR ITGIELPQRG FRPAERVEET GRHLKKFCER  540
FGVSLEYHPI ASQHWEDIKL EDLKIVKGEV LCANCLFRLG RFLDESVAPD SPRDKLLRMI  600
RKMKPSVFVN TVTNGSYNSP FFLTRFREAL FHFTMLFDML GTILPRGNPD LNEFIQEHYA  660
LDVINVVACE GAERVERPET YKQWKSRHLA AGFKPHPLQE ETMKKLRSRS KATSHIDFLF  720
DKDGNWMLQG WKGRILSASS CWVSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-34	375	698	8	328	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678449798

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089502.1	0.0	scarecrow-like protein 14
Refseq	XP_020552354.1	0.0	scarecrow-like protein 14
Refseq	XP_020552355.1	0.0	scarecrow-like protein 14
TrEMBL	A0A2G9I6D9	0.0	A0A2G9I6D9_9LAMI; Uncharacterized protein
STRING	Migut.D02079.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-169	SCARECROW-like 14