PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678449795

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

GRAS

Protein Properties

Length: 604aa MW: 67859.8 Da PI: 6.736

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678449795	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	363.4	3.2e-111	229	598	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 lL++cA+av+++d + a+ lL r+++++s++gd+++Rla+yf+ AL+arla+ + ely+a+++++ s ++ l+a+k++ +++P+ k+s+++aN++I 678449795 229 GLLIQCAQAVANHDIRTANDLLIRIRQHSSSHGDSTERLAHYFATALEARLAGAGMELYAAMSTRRIS---AADILKAYKTLINACPFRKMSNMLANKTI 325 68***********************************************************99999...9************************ PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 + + g +Hi+Df+i +G+QWp+L+++L++Rp+gpp+l +Tg++ p++g ++++ etg+rLak++++++vpfe+++ +a+++e++++e++++++gE 678449795 326 NKLAVGVPSLHIVDFGILYGFQWPCLIRSLSERPGGPPKLHVTGIDLPQPGfrPADRVAETGRRLAKYCSRFNVPFEYSP-IAQKWETIKVEDIKFEEGE 424 **********************************************9*************************.7************** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 l+Vn+ ++l+++ de+v++ s+rd+vL+l+++++P+++++ + +n + F++rf eal ys+lfd+++a++ re+++r +E++l g+e+ n++ac 678449795 425 LLVVNSLYRLQNVSDETVNSGSPRDAVLRLIRKMNPNMLIFGVLNGTYNIPYFVTRFREALFQYSSLFDMFDATMDREDKNRLLLEEQLYGKEALNIIAC 524 ************************************************************************************************ PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 eg+er+e+ et+++W+ r ++ GF++vpl+ +++k +k +++ + ++v+e+ +++++gWk+r L+++S+W+ 678449795 525 EGSERVEQPETYRQWQVRNRRLGFRQVPLDAEIVKCVKNKVKTEYHIDFSVDEDGEWMLQGWKGRVLYALSCWQ 598 **************************************999667***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.02	201	578	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-108	229	598	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence Send to blast
MDTLGFSSCF PQAKDFQGNC RSVVTFPDEN HFKVKPEVAA VNNSSTTQRN IPADVTQDSA 60 DGSHETDHSD AILKFISQML MEEEDLETRP CMLQDCLALQ ATEKSLYDVL LNNNYADSTT 120 SCGCAAGESS SGKYSSSSVS STGEVNSIGK KYHSREESDS IEVDRSSKHV ANCDFESEPI 180 EIYDNVLLCG RTDGVSCEKS KKLWRGHNRG RPKGSKKHGI TREVVDLTGL LIQCAQAVAN 240 HDIRTANDLL IRIRQHSSSH GDSTERLAHY FATALEARLA GAGMELYAAM STRRISAADI 300 LKAYKTLINA CPFRKMSNML ANKTINKLAV GVPSLHIVDF GILYGFQWPC LIRSLSERPG 360 GPPKLHVTGI DLPQPGFRPA DRVAETGRRL AKYCSRFNVP FEYSPIAQKW ETIKVEDIKF 420 EEGELLVVNS LYRLQNVSDE TVNSGSPRDA VLRLIRKMNP NMLIFGVLNG TYNIPYFVTR 480 FREALFQYSS LFDMFDATMD REDKNRLLLE EQLYGKEALN IIACEGSERV EQPETYRQWQ 540 VRNRRLGFRQ VPLDAEIVKC VKNKVKTEYH IDFSVDEDGE WMLQGWKGRV LYALSCWQPA 600 AKSS

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence Send to blast

MDTLGFSSCF PQAKDFQGNC RSVVTFPDEN HFKVKPEVAA VNNSSTTQRN IPADVTQDSA  60
DGSHETDHSD AILKFISQML MEEEDLETRP CMLQDCLALQ ATEKSLYDVL LNNNYADSTT  120
SCGCAAGESS SGKYSSSSVS STGEVNSIGK KYHSREESDS IEVDRSSKHV ANCDFESEPI  180
EIYDNVLLCG RTDGVSCEKS KKLWRGHNRG RPKGSKKHGI TREVVDLTGL LIQCAQAVAN  240
HDIRTANDLL IRIRQHSSSH GDSTERLAHY FATALEARLA GAGMELYAAM STRRISAADI  300
LKAYKTLINA CPFRKMSNML ANKTINKLAV GVPSLHIVDF GILYGFQWPC LIRSLSERPG  360
GPPKLHVTGI DLPQPGFRPA DRVAETGRRL AKYCSRFNVP FEYSPIAQKW ETIKVEDIKF  420
EEGELLVVNS LYRLQNVSDE TVNSGSPRDA VLRLIRKMNP NMLIFGVLNG TYNIPYFVTR  480
FREALFQYSS LFDMFDATMD REDKNRLLLE EQLYGKEALN IIACEGSERV EQPETYRQWQ  540
VRNRRLGFRQ VPLDAEIVKC VKNKVKTEYH IDFSVDEDGE WMLQGWKGRV LYALSCWQPA  600
AKSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-49	214	599	1	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678449795

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089500.1	0.0	scarecrow-like protein 30
Swissprot	Q9XE58	1e-175	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2G9I6F4	0.0	A0A2G9I6F4_9LAMI; Uncharacterized protein
STRING	Migut.D02076.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-177	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]