PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678449484
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRAS
Protein Properties Length: 612aa    MW: 67105.1 Da    PI: 5.4451
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678449484genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS403.81.7e-1232476051374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv+ L++cAeav+++++++a+a+L+++   a +++ +m+++a+yf+eALa+r++  ++ ++++ +         s++   ++ f+e++P+lkf+h+taNq
  678449484 247 LVHSLMACAEAVQEENFTAAEAFLKKVVFFAVSQAGAMRKVATYFVEALAQRIYC-WNPMMSQGS------AAFSDANLLQRHFYETCPYLKFAHFTANQ 339
                689***************************************************8.555553322......235667778889***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                aIlea++g++rvH+iDf+i++G+QWp+Ll aLa++++g+p++R+Tg+++p+   ++ l+++g  La+fA +++++f+f+ +v+++l+dl++++L++++gE
  678449484 340 AILEAFSGKKRVHVIDFSINHGVQWPPLLYALATQDGGAPTFRLTGIAPPS---HDDLNTVGLTLAEFAGAMNIEFRFRSFVTNSLADLNPSMLEIQEGE 436
                *************************************************65...99******************************************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                alaVn++l lh+ll++++++++    vL+lv +l+P +++++eqea+hns+ Fl+rf+eal++ys+lfdsle++ +r  +e++ +++++lg++i nvva 
  678449484 437 ALAVNSILDLHQLLANPGAIDK----VLQLVHQLNPLIFTIAEQEANHNSSIFLDRFTEALHHYSTLFDSLESG-GRGGDEDKLMSEVYLGQQIHNVVAG 531
                **************99999988....***********************************************9.9999********************* PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                eg er+erhetl++Wr r+++ GF pv+ +++++k a  l++  ++dgy+v e+ g+l+lgW+ rpL+++SaW+
  678449484 532 EGPERVERHETLSQWRTRFGSHGFLPVHHGSNVYKLATELVAVDGGDGYTVAEDGGCLMLGWHMRPLIAASAWT 605
                *************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120414.4E-23117183IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011293.1E-24117189No hitNo description
PROSITE profilePS5098559.495221585IPR005202Transcription factor GRAS
PfamPF035146.0E-121247605IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MSSIFYPPGL VYYTLPRSNG ISIPWPHNPT LCGCASLSFS DFPYKRTETD AATAAVAAVC  60
EKPSTVAPIP ILGCCLLLRM KKRRVFEKQG REKQGVCESA DKPNMWGAHD VSESEEDEFF  120
AALGYVLKSS EMADVARKIG QIEMAMGSEE GLCQLASDET VHYNPADLSS WLGSMLSGLD  180
PMPRFPSPDN CSVTASVDLD FGSDLGSVPG KAVYPPLKKV KTSPSQKGCF QEKRSVVLDS  240
QENGIRLVHS LMACAEAVQE ENFTAAEAFL KKVVFFAVSQ AGAMRKVATY FVEALAQRIY  300
CWNPMMSQGS AAFSDANLLQ RHFYETCPYL KFAHFTANQA ILEAFSGKKR VHVIDFSINH  360
GVQWPPLLYA LATQDGGAPT FRLTGIAPPS HDDLNTVGLT LAEFAGAMNI EFRFRSFVTN  420
SLADLNPSML EIQEGEALAV NSILDLHQLL ANPGAIDKVL QLVHQLNPLI FTIAEQEANH  480
NSSIFLDRFT EALHHYSTLF DSLESGGRGG DEDKLMSEVY LGQQIHNVVA GEGPERVERH  540
ETLSQWRTRF GSHGFLPVHH GSNVYKLATE LVAVDGGDGY TVAEDGGCLM LGWHMRPLIA  600
ASAWTGRESR EF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-5724260713380Protein SCARECROW
5b3h_D7e-5724260713380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678449484
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070609.10.0DELLA protein GAI1
RefseqXP_012846067.10.0PREDICTED: DELLA protein GAI1
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A4D9BQN20.0A0A4D9BQN2_SALSN; DELLA protein
STRINGMigut.E00445.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein