PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678449415
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 275aa    MW: 32415.7 Da    PI: 10.6379
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678449415genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.87.9e-3076126151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                krienk+nrqvtfskRr+g+lKKA+E+S+LCdaev +i+fs++gkl+ey+s
  678449415  76 KRIENKINRQVTFSKRRAGLLKKAHEISILCDAEVGLIVFSHKGKLFEYAS 126
                79***********************************************86 PP
2K-box111.58.7e-3715324112100
      K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                +  ++++ e++kLk++ie Lqr++Rh++GedL+s+s+k+Lq+LeqqL+++lk+iR++Kn++++e+i++lq+kek++qe+n  L+kk++e
  678449415 153 TSPANWTLEYSKLKARIELLQRNHRHYMGEDLNSMSMKDLQNLEQQLDTALKSIRTRKNQVIYESISDLQRKEKAIQEQNSILTKKIKE 241
                56789*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-4168127IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.11368128IPR002100Transcription factor, MADS-box
CDDcd002655.59E-4169141No hitNo description
SuperFamilySSF554551.03E-3369158IPR002100Transcription factor, MADS-box
PROSITE patternPS00350070124IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-317090IPR002100Transcription factor, MADS-box
PfamPF003192.7E-2577124IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-3190105IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-31105126IPR002100Transcription factor, MADS-box
PfamPF014861.1E-31154239IPR002487Transcription factor, K-box
PROSITE profilePS5129716.554155245IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEKSGRQWRK RTLEKKEVSP PSKLRKDRAA AFPMVKLCDT FARVSILRLE WEKNKKERKK  60
ERKSKRGMGR GKVQLKRIEN KINRQVTFSK RRAGLLKKAH EISILCDAEV GLIVFSHKGK  120
LFEYASDSCM DRILEKYERY SFAERHLVAN EPTSPANWTL EYSKLKARIE LLQRNHRHYM  180
GEDLNSMSMK DLQNLEQQLD TALKSIRTRK NQVIYESISD LQRKEKAIQE QNSILTKKIK  240
EKEKEMEQRS QCATALQLPT PLLMTMGYHN LLQLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-2368141173Myocyte-specific enhancer factor 2B
1tqe_Q4e-2368141173Myocyte-specific enhancer factor 2B
1tqe_R4e-2368141173Myocyte-specific enhancer factor 2B
1tqe_S4e-2368141173Myocyte-specific enhancer factor 2B
6c9l_A4e-2368141173Myocyte-specific enhancer factor 2B
6c9l_B4e-2368141173Myocyte-specific enhancer factor 2B
6c9l_C4e-2368141173Myocyte-specific enhancer factor 2B
6c9l_D4e-2368141173Myocyte-specific enhancer factor 2B
6c9l_E4e-2368141173Myocyte-specific enhancer factor 2B
6c9l_F4e-2368141173Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15462KKERKKERK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678449415
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831692.11e-106PREDICTED: truncated transcription factor CAULIFLOWER A
SwissprotD7KWY61e-100AP1_ARALL; Floral homeotic protein APETALA 1
TrEMBLA0A2G9HS311e-111A0A2G9HS31_9LAMI; MADS box transcription factor
STRINGMigut.E00037.1.p1e-106(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-92MIKC_MADS family protein
Publications ? help Back to Top
  1. Hu TT, et al.
    The Arabidopsis lyrata genome sequence and the basis of rapid genome size change.
    Nat. Genet., 2011. 43(5): p. 476-81
    [PMID:21478890]