PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678449379
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRF
Protein Properties Length: 357aa    MW: 39477.1 Da    PI: 9.854
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678449379genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.38.9e-26109153145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrg++rsrk++e+
  678449379 109 DPEPGRCRRTDGKKWRCSRDVVVGQKYCERHMHRGKNRSRKPVEN 153
                79****************************************997 PP
2QLQ41.83.2e-151246236
        QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
               +F+  Q+q+L+ Q+l++++++a++ vPpeLl  ++
  678449379 12 YFSLVQWQELELQALIFRHMIAGAAVPPELLHLVK 46
               6999**************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.4E-61147IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.841247IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.2E-111345IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.054109153IPR014977WRC domain
PfamPF088791.3E-21110152IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MVQPGTMMGS CYFSLVQWQE LELQALIFRH MIAGAAVPPE LLHLVKKSLV SDSSPYCIFS  60
PPHSYYAQYH SARKKSALLC GTFLSFISVT HVLFWLVMQT GYWGRTAMDP EPGRCRRTDG  120
KKWRCSRDVV VGQKYCERHM HRGKNRSRKP VENPTSAAGF FDNSAAEEMA AARQFCLSGP  180
SPPSVDLLQR NQRPMEFMNE TKCCPLESLN DGHGSSGGKR TLIPFFDDWP RSIHETATDD  240
AAKMVVSATS LSISIPGNPS SDVSLKLGTC KGNEAGRERP PMSWSTGGPL AEALRSSSTS  300
ASTIMFCHRS RDKRSGFVTT QSNPWTQAGI RNSVQVKKPT GAFSSMKSTT VRKVLNH
Cis-element ? help Back to Top
SourceLink
PlantRegMap678449379
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783589.15e-90PREDICTED: growth-regulating factor 3-like
RefseqXP_016445515.15e-90PREDICTED: growth-regulating factor 3-like
TrEMBLA0A1S3Y0B51e-88A0A1S3Y0B5_TOBAC; growth-regulating factor 3-like
TrEMBLA0A1U7X9I61e-88A0A1U7X9I6_NICSY; growth-regulating factor 3-like
STRINGXP_009783589.12e-89(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.12e-55growth-regulating factor 4