PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678449161
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 274aa    MW: 30091.4 Da    PI: 5.0678
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678449161genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-141763248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+W++ Ed +lv  ++ +G  +W++ ++  g+ R++k+c++rw +yl
        678449161 17 GPWSAAEDARLVAFIRDHGHTNWRALPKQAGLLRCGKSCRLRWINYL 63
                     89*****************************99************97 PP
2Myb_DNA-binding54.92.1e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+e +++++  lG++ W++Ia++++ gRt++++k+ w+++l
        678449161  69 RGNFTPQEEETIIELHSSLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2251163IPR017930Myb domain
SuperFamilySSF466892.08E-2814110IPR009057Homeodomain-like
SMARTSM007175.1E-111565IPR001005SANT/Myb domain
PfamPF002496.8E-131663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-221770IPR009057Homeodomain-like
CDDcd001678.73E-91863No hitNo description
PROSITE profilePS5129426.0464118IPR017930Myb domain
SMARTSM007172.4E-1568116IPR001005SANT/Myb domain
PfamPF002493.6E-1669114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2771117IPR009057Homeodomain-like
CDDcd001679.32E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGGGRTPCCD KSKVKTGPWS AAEDARLVAF IRDHGHTNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTPQEEETI IELHSSLGNK WSKIASHLPG RTDNEIKNVW NTHLKKRAMA  120
RKNEHNLSLS SSSSSSYDTR TVNAGPTEEA GDGDADKSNV AAAASFCSTS SSLASVSVSV  180
SDPQSEASVS GSEIEKTGME AKLDEDIWTM LDSMDTGSSS SLDVGKDDEL QKWMAFFECE  240
LFLEGGADQW PRDEQLSLPW DGSPLWPSSP FFLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25171188108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00144DAPTransfer from AT1G16490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678449161
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022028696.12e-81transcription factor MYB58-like
SwissprotQ9SA471e-74MYB58_ARATH; Transcription factor MYB58
TrEMBLA0A2G9HPT19e-85A0A2G9HPT1_9LAMI; Transcription factor, Myb superfamily
STRINGXP_009593119.14e-78(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.15e-72myb domain protein 58
Publications ? help Back to Top
  1. Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
    Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
    J. Plant Physiol., 2015. 175: p. 86-94
    [PMID:25506770]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
    Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.
    J. Plant Res., 2018. 131(2): p. 297-305
    [PMID:28921082]