PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678448833
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 413aa    MW: 45450 Da    PI: 7.8284
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678448833genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.4e-1870117148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W++eEde+l++ ++++G g+W+t+++  g+ R++k+c++rw +yl
        678448833  70 KGLWSPEEDEKLINHITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYL 117
                      678*******************************************97 PP
2Myb_DNA-binding46.21.1e-14123166146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++eE+ l+v++++ lG++ W+ Ia+ ++ gRt++++k+ w++
        678448833 123 RGTFSAEEENLIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 166
                      899*******************.*********.*********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-2762120IPR009057Homeodomain-like
PROSITE profilePS5129418.72165117IPR017930Myb domain
SuperFamilySSF466893.33E-2968164IPR009057Homeodomain-like
SMARTSM007174.6E-1369119IPR001005SANT/Myb domain
PfamPF002491.6E-1570117IPR001005SANT/Myb domain
CDDcd001671.00E-1173117No hitNo description
PROSITE profilePS5129424.924118172IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-25121173IPR009057Homeodomain-like
SMARTSM007172.5E-13122170IPR001005SANT/Myb domain
PfamPF002492.9E-13123166IPR001005SANT/Myb domain
CDDcd001671.52E-9125168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDNCGKEYLD GLNEQTIIKL LPLSASHSWA PWFPVTCFRS KHKYCDCAFL LRASSFMGRH  60
SCCYKQKLRK GLWSPEEDEK LINHITKHGH GCWSTVPKLA GLQRCGKSCR LRWINYLRPD  120
LKRGTFSAEE ENLIVELHAV LGNRWSQIAA QLPGRTDNEI KNLWNSSLKK KLKQRGIDPN  180
THKLLSELPE KDSPTVTEKA SDVSTDKPNS DSITAPAFSP VENCGSGHEF FLKSLSSGAA  240
AAAVAATAPG FSELVSFQQM GFGQNSNFFN TNCPPANLDP ASSSIMATPA AGGKPGAGFN  300
SGNCSLPLDA KFENWGNAAA RTTKTTAVFE CHNGFPWGKE PGYAPPPETP VSATWNGYLQ  360
PPIFIANTNE NPPNSRESYT VTKPEPSFQE EDSWNWHQNQ PQQSPVYGNI FPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28681725108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173LKKKLKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678448833
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087570.11e-104transcription factor MYB86
SwissprotQ8VZQ21e-86MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A059PRD81e-96A0A059PRD8_SALMI; MYB-related transcription factor
STRINGXP_006480338.16e-94(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-77myb domain protein 61
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]