PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678448036 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 201aa MW: 22809.8 Da PI: 8.5686 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.9 | 5.7e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskRrng+lKKA ELS+LC+a+v vi++sstgkly yss 678448036 9 KRIEEKSARQVTFSKRRNGLLKKARELSILCAADVGVIVYSSTGKLYQYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 29.6 | 2.8e-11 | 91 | 168 | 18 | 95 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 + +++ e Lqr R+l + ++ sl +L Le+qLe +l +i++ K++ll++ ++ l++ ek+l+ee+ L+ 678448036 91 CSKYSEYITSEELLQRVERQLAEPCDDNDSLVDLVVLENQLEVALFQIKNAKTHLLIKTMSGLREEEKSLREEKSLLE 168 5555555556677888888888888888899******************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.478 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.53E-36 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-28 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.846 | 87 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 9.0E-9 | 102 | 169 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGRRRLEIKR IEEKSARQVT FSKRRNGLLK KARELSILCA ADVGVIVYSS TGKLYQYSSG 60 NSLPRTVWRY YNYAESGKSP TDGDCKEQAD CSKYSEYITS EELLQRVERQ LAEPCDDNDS 120 LVDLVVLENQ LEVALFQIKN AKTHLLIKTM SGLREEEKSL REEKSLLESN KIGKKKVKPT 180 NGNLDLNAAP DDQPGDYNGN R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-20 | 1 | 87 | 1 | 86 | MEF2C |
5f28_B | 2e-20 | 1 | 87 | 1 | 86 | MEF2C |
5f28_C | 2e-20 | 1 | 87 | 1 | 86 | MEF2C |
5f28_D | 2e-20 | 1 | 87 | 1 | 86 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678448036 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071241.1 | 2e-58 | agamous-like MADS-box protein AGL27 isoform X4 | ||||
TrEMBL | B2DCP7 | 1e-62 | B2DCP7_9LAMI; RIN-like MADS-box protein | ||||
STRING | XP_009795052.1 | 2e-57 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65080.1 | 3e-25 | MIKC_MADS family protein |