PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678447866 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TCP | ||||||||
Protein Properties | Length: 261aa MW: 29193.8 Da PI: 4.8162 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 100.6 | 2.7e-31 | 44 | 107 | 2 | 65 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 +g+kdrhsk++T++g RdRRvRls ++a++f+d+qd+LG+d++sk+i+WL+q+ak+ai +l 678447866 44 PGRKDRHSKVSTARGARDRRVRLSPKTAIQFYDVQDRLGYDRPSKAIDWLMQEAKAAIEALDAP 107 589********************************************************99766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-29 | 45 | 106 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.897 | 46 | 104 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MPWRAKRMVL FMQMDFLHRM ELEDSGGGFK GEQVDCCDRV LRCPGRKDRH SKVSTARGAR 60 DRRVRLSPKT AIQFYDVQDR LGYDRPSKAI DWLMQEAKAA IEALDAPPTL PLPPPPVPSA 120 NDEDSYYYYC DDKCLIDEAP TRSPSMLCHE NGYFAAPLTE RDSEVFDSEI ERMQRIFGCS 180 NDDATGAGVG GAAFFSHPAV APLHFPETPL FCQGEIFSHR EPLQSSNSYS RMSTFSSLSS 240 QFPGINDELA AIISTVADAD Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-18 | 51 | 104 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-18 | 51 | 104 | 1 | 54 | Putative transcription factor PCF6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678447866 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G9I0L4 | 3e-53 | A0A2G9I0L4_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4112 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 9e-30 | TCP domain protein 10 |