PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678447783
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bZIP
Protein Properties Length: 1312aa    MW: 146851 Da    PI: 7.6614
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678447783genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.64.3e-11285343563
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                kr++r   NR +A rs +RK+ +i eLe kv++L++e ++L  ++  l+ke + l++++
  678447783 285 KRAKRILANRQSAARSKERKLRYISELEHKVQTLQTEATTLSAQVTILQKEFSDLTAQN 343
                9****************************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-18281345IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.289283346IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.36E-11285340No hitNo description
Gene3DG3DSA:1.20.5.1709.8E-12285342No hitNo description
PfamPF001703.0E-10285343IPR004827Basic-leucine zipper domain
CDDcd147032.37E-24286335No hitNo description
PROSITE profilePS513757.541539569IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.131570604IPR002885Pentatricopeptide repeat
PfamPF015350.16573601IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.851641671IPR002885Pentatricopeptide repeat
PfamPF130413.1E-15671715IPR002885Pentatricopeptide repeat
PROSITE profilePS5137514.896672706IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.0E-12674708IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.1E-15675738IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137512.551707741IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.0E-7709743IPR002885Pentatricopeptide repeat
PfamPF138121.5E-6729788IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.885742776IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.9E-5744777IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.261777811IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.917812842IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.1E-15815842IPR011990Tetratricopeptide-like helical domain
PfamPF130416.1E-9842881IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.299843877IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.8E-8845879IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.1E-15876950IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137511.827878912IPR002885Pentatricopeptide repeat
SuperFamilySSF484525.31E-6878905IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007565.5E-8880911IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.603914948IPR002885Pentatricopeptide repeat
PfamPF130417.2E-12914961IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.9E-8917949IPR002885Pentatricopeptide repeat
SuperFamilySSF484525.31E-69771155IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.4349841014IPR002885Pentatricopeptide repeat
PfamPF015350.0529891011IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.93410151049IPR002885Pentatricopeptide repeat
PfamPF130413.1E-1110151061IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.1E-1510161062IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007562.4E-810171050IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.78310501080IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.78510861116IPR002885Pentatricopeptide repeat
PfamPF015350.6810901109IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.1E-1511161152IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.2711181152IPR002885Pentatricopeptide repeat
PfamPF144321.4E-1211911302IPR032867DYW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1312 aa     Download sequence    Send to blast
MPQTVKHGFS HSRSLSPSTM YGNSCLPPLS PFPPSESSRA SSSSNLNDAA MEELDVSSNG  60
PHVAPSFAWE NAFSGGNNLP PRRGHRRSNS DLPSGFSATL QPAHQMVPCS QGRLDDPREV  120
FGNGNFSGLK RDNVDTSGFH KCNGAEFGDI SSDGEVVDNL FHSLLNIDKD NTKVSATFAS  180
GETYSSDPAS LRPAERAKRN AAGDIAPPSR HSRSLSMDSA MVKYEFNDEY LKKSAVSNHL  240
SPSSPVNGDL STLNLDFGNG GFNDLDMKKI MKDEKLAEIA LSDPKRAKRI LANRQSAARS  300
KERKLRYISE LEHKVQTLQT EATTLSAQVT ILQKEFSDLT AQNNELKFRV QAVEQQAKLK  360
DDSLFASFEQ RNGSRDSASE ARKIGAARQH GLTQGVRQAS RPHDMKAGAA ESFNKSRSRS  420
LAHFPGYTLD PCRWDENEDW SKRMKVSGFH PMETLTVVLP CNCRSTIPLT TSESPWKTGA  480
FRKISSEKLR GDIAEAISSQ STLSYTRITR LIDSCVNSNS IELCHEVHAL VKRLVKKPDP  540
FLETKLVGMF AKCGSLCGAL SVFDEMRERD LLAWSSVIGA FSREKRWWDV VELFHWMMED  600
GDVIPDDFLF PKILQACGNH GGIECGRLIH GMLIKLGKLN QLRVNNSILA VYAKCGWLNS  660
AKAFFDEMEV KDVVSWNALI KGHCRAGKVD EAHRLLDLMR KEGIEPDIVT WNMLISNWSQ  720
LGKYDFAMKL MKDMEKNGLK PDIYTWTSLI LGLVHTNRGL LAEELFREML LSGVKPNDVA  780
LMSVISACSS IKDLKKGKEV HSVGIKLGYG EEVLVGNSLI DMYSAHGELE AASKAFDKIL  840
EKDVYSWNSM IGGYCKAGYC GVAHDLFKLM QDSNVSPNVI TWNTMISGYI QNGDEDQALD  900
LFNRMETDGG VKRDTASWNL LISGYLRHGQ KDSAFRMFRQ MQSSGFRPNS VTVLSILPAC  960
ANLIAFTKVK EIHCSVMRYN LESELPVANC LIDSYAKSGN IRYAEAIFNA IPSADIITWN  1020
TLLNGYVLHG RYSQAIQLFE VMREMDIRPN RSTFVSILSA YGLAKRVDEG IRTFTNMAEK  1080
FQIAHSLDHY VAMVHLFGRS GKLDEAFDIA AGMNMEPDAA IWSALLTACY RHGNTRLATH  1140
ASERLLELEP ENILFRQYVS QLHGINSESS HLRRHGSRRE SVESHASCWI LHQRMVHMFT  1200
TSDPSHLEAT SVSWIRNMES KAKELKQHRR LVLQDEEEEE YVHCEKVALA FAISRSRQPF  1260
KAIRIIKDFR MCEGCHGFTK LVSRTYSCEV FVNDTKCLHH FKQGTCSCGD YW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9h_A7e-70501110612450pentatricopeptide repeat protein dPPR-U8G2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678447783
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083504.10.0pentatricopeptide repeat-containing protein At1g19720 isoform X1
SwissprotQ9FXH10.0PPR52_ARATH; Pentatricopeptide repeat-containing protein At1g19720
TrEMBLA0A2G9FXR90.0A0A2G9FXR9_9LAMI; Uncharacterized protein
STRINGMigut.C00818.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.34e-63bZIP family protein
Publications ? help Back to Top
  1. Aubourg S,Boudet N,Kreis M,Lecharny A
    In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants.
    Plant Mol. Biol., 2000. 42(4): p. 603-13
    [PMID:10809006]
  2. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]