PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678447618
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HSF
Protein Properties Length: 341aa    MW: 38991.1 Da    PI: 4.6237
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678447618genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.56.3e-31421672103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........................ CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........................ 74 
                   Fl+k+yei+ed+e++ +iswse +nsf+v+d+++fa+++Lp+yFkh+nfaSF+RQLn+Y  + +      ++                         
     678447618  42 FLMKTYEIVEDPETDPIISWSEAKNSFIVWDSHKFANTLLPRYFKHRNFASFIRQLNTYVSQFLFYVFPPEMGslsfldlasdefanlqlsggfrkv 138
                   9**********************************************************65554444433222456999999999998888777654 PP

                   XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  75 kekiweFkhksFkkgkkellekikrkkse 103
                   +++ weF+++ F  g+k+ll++ikr++++
     678447618 139 DPDRWEFANSGFLGGQKHLLRTIKRRRNS 167
                   49************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.98E-3038164IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-3438164IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-4538164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-2742164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-144265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-148092IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-1493105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEFAEVKVED EGAYVAAAAP SFPSSSTPRP MEGLQEIGPP PFLMKTYEIV EDPETDPIIS  60
WSEAKNSFIV WDSHKFANTL LPRYFKHRNF ASFIRQLNTY VSQFLFYVFP PEMGSLSFLD  120
LASDEFANLQ LSGGFRKVDP DRWEFANSGF LGGQKHLLRT IKRRRNSSAL QQNPPAPQSC  180
VEIGQYGIEE ELEKLKCDRS ILMAETVRLR QQQKKSTDLL AEMELRIGEL ERKQGQMMNF  240
LAKAFRNPTF IHQLGNMNGH KQIQIGLKRR LTMSPALEER TRLNVEDFLG GEPETNQSIW  300
EELFSEDVAP ESVPPVQEVN SEEVANWEEE LQDIVDQLGL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-214016718123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678447618
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049209.11e-102PREDICTED: heat shock factor protein HSF30 isoform X2
RefseqXP_018726803.11e-101PREDICTED: heat shock factor protein HSF30 isoform X1
RefseqXP_018726804.11e-101PREDICTED: heat shock factor protein HSF30 isoform X1
SwissprotP411525e-96HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A059CTI51e-100A0A059CTI5_EUCGR; Uncharacterized protein
STRINGXP_010049209.11e-101(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.19e-91heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]