PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678447295 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | AP2 | ||||||||
Protein Properties | Length: 404aa MW: 45137.5 Da PI: 7.2983 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1e-17 | 120 | 169 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a++k++g 678447295 120 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAALKFRG 169 78*******************......55************************998 PP | |||||||
2 | AP2 | 42.4 | 1.8e-13 | 212 | 262 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g 678447295 212 SKYRGVTLHK-CGRWEARMGQY--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 262 89********.7******5552..1.25**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.2E-10 | 120 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-16 | 120 | 177 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.24E-24 | 120 | 178 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.9E-17 | 121 | 177 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-31 | 121 | 183 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.097 | 121 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-17 | 212 | 271 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.8E-9 | 212 | 262 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.83E-25 | 212 | 272 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.9E-16 | 213 | 270 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-31 | 213 | 276 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.527 | 213 | 270 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 214 | 225 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 252 | 272 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MAIFCLNLNI DLKSTVTDQS DAASKKTSLL NGDSIEHSGS SIASSDVIME SSSADNSEAS 60 CFVGFDVWKN NGECEKYSTS GYVMRQFFPV QKLEDQTLFQ GPERRKQVKK CRRGPRSRSS 120 QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHSAARAY DRAALKFRGL DADINFEVCD 180 YEEDLEMMRN LTKEEFVHIL RRQSTGFARG SSKYRGVTLH KCGRWEARMG QYLGKKYIYL 240 GLFDSEIEAA RAYDKAAIKC NGREAVTNFE PSMYDEELSS QHQTGILIAD EHQDLDLNLG 300 IAPPDAANSR NNRLIKKLGS SHLHSAPKDE LQAIGGTHPL YSHAAAGSCI SPLYKGIELK 360 GSTIADSCGY WPFVSNAASS GFAHTIELPD YLNNESKLTT QKQQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678447295 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077383.1 | 1e-127 | floral homeotic protein APETALA 2 | ||||
Swissprot | B8AMA9 | 1e-100 | AP22_ORYSI; APETALA2-like protein 2 | ||||
Swissprot | Q84TB5 | 1e-99 | AP22_ORYSJ; APETALA2-like protein 2 | ||||
TrEMBL | A0A2G9GII3 | 1e-130 | A0A2G9GII3_9LAMI; Uncharacterized protein | ||||
STRING | Gorai.009G104200.1 | 1e-114 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 9e-97 | AP2 family protein |
Publications ? help Back to Top | |||
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