PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678446797 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 198aa MW: 21925.9 Da PI: 9.3963 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.8 | 1.4e-16 | 57 | 111 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F +++ ++ ++eLA++l Lt rqV vW+qNrRa+ k 678446797 57 RKKLRLSKNQASLLEESFGRHSSLTPMLKQELARELILTPRQVEVWYQNRRARAK 111 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 103.6 | 1.6e-33 | 57 | 145 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlsk+q++lLEesF +++ L+p K+elareL l+prqv+vW+qnrRAR k+kq+E ++e L+r + +l+een+rL+ke ee++ + 678446797 57 RKKLRLSKNQASLLEESFGRHSSLTPMLKQELARELILTPRQVEVWYQNRRARAKLKQTEANCELLRRLCTSLSEENQRLRKELEEVK-A 145 69**********************************************************************************9998.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.13E-15 | 41 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.807 | 53 | 113 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.3E-12 | 56 | 117 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-15 | 57 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 7.3E-14 | 57 | 111 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.29E-12 | 57 | 114 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 88 | 111 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 5.6E-14 | 113 | 157 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGFDDSCLVL ELGIGPDRRN RYREASSVEK RAQEQGSGGS WASSRISDED DRGSYARKKL 60 RLSKNQASLL EESFGRHSSL TPMLKQELAR ELILTPRQVE VWYQNRRARA KLKQTEANCE 120 LLRRLCTSLS EENQRLRKEL EEVKAVKSVT PPLCMQIPAA AIAICPSCQR IGGATVITQS 180 SAATAAKSSF THTPSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 113 | RRARAKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678446797 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019267376.1 | 8e-60 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | A2Z1U1 | 5e-48 | HOX11_ORYSI; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | A0A314KZ31 | 2e-58 | A0A314KZ31_NICAT; Homeobox-leucine zipper protein hat22 | ||||
STRING | XP_009775231.1 | 4e-59 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 4e-44 | homeobox from Arabidopsis thaliana |