PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678446773 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 22271.7 Da PI: 6.2478 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 9.8e-18 | 69 | 118 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+W+AeIrdp + +r++lg+f+t e Aa a++ +++++g 678446773 69 RYRGVRKRP-WGKWAAEIRDP-----HkaARVWLGTFDTSEAAAMAYDMQALRYRG 118 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.8E-12 | 69 | 118 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 69 | 128 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 69 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-31 | 69 | 132 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.48E-27 | 69 | 128 | No hit | No description |
PROSITE profile | PS51032 | 24.487 | 69 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 70 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 92 | 108 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MTAMVSALAR VVAGESSTPA AGGFSTPCKR GREEEEGEEG ESTVIRSAES TVFRYAGTAG 60 FTTEAAGRRY RGVRKRPWGK WAAEIRDPHK AARVWLGTFD TSEAAAMAYD MQALRYRGCK 120 AKLNFPENVK LLDGLPQPGH LPGSHEHPSP AIHSDEPAQF HFSMYSSPED AAASPIPKFY 180 PPQPPDISDI WPEDGGGAGE RYSSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-23 | 65 | 130 | 1 | 67 | ATERF1 |
3gcc_A | 5e-23 | 65 | 130 | 1 | 67 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678446773 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090449.1 | 2e-36 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A4D8YMV8 | 2e-40 | A0A4D8YMV8_SALSN; EREBP-like factor | ||||
STRING | XP_010527318.1 | 9e-35 | (Tarenaya hassleriana) | ||||
STRING | XP_004160502.1 | 2e-34 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 6e-32 | ERF family protein |