PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678446646
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 872aa    MW: 96727.9 Da    PI: 6.7901
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678446646genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.64.8e-23193294199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++ +++a+e+      + k++ +++l+ +d+ g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+v
  678446646 193 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-KQPPTQELVARDLLGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELRV 289
                99*****************************63.4445569************************************************..449999*** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +v+r+
  678446646 290 GVRRA 294
                **996 PP
2Auxin_resp123.11.9e-40319401183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++tks+F+v+Y+Pr+s++eF+v+++++++++k+++++GmRfkm+fe+++s+e+r++Gtvvg++d+dp +Wp+SkWr+Lk
   678446646 319 AWHAIQTKSMFTVFYKPRTSPAEFIVPYHQYMESIKNNYTIGMRFKMRFEGDESPEQRFTGTVVGIEDADPKKWPDSKWRCLK 401
                 89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-38187322IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-39189308IPR015300DNA-binding pseudobarrel domain
CDDcd100174.47E-21191293No hitNo description
PfamPF023626.3E-21193294IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702193295IPR003340B3 DNA binding domain
SMARTSM010191.4E-21193295IPR003340B3 DNA binding domain
PfamPF065072.9E-37319401IPR010525Auxin response factor
PfamPF023091.7E-10738834IPR033389AUX/IAA domain
SuperFamilySSF542772.06E-11748826No hitNo description
PROSITE profilePS5174521.663749831IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    Send to blast
MAASEVSIRG YSDNRVCNSS PGKGSSAAGK DDAETALYTE LWKACAGPLV SVPRENELAF  60
YFPQGHIEQV LSLFCVAFLN SEDQNSVTTP FPFRLAPVLQ LGFLPVSPSF SVGILVQQVE  120
ASTNQSGDQQ MPVYNLPPKI LCRVVNVSLK AEPDTDEVFA QITLMPEPNQ DETAVQKDSN  180
PVVAPPRFHV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSKQPPT QELVARDLLG  240
NEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRAMRQQGN  300
SPSPVISSHS MQLGVLATAW HAIQTKSMFT VFYKPRTSPA EFIVPYHQYM ESIKNNYTIG  360
MRFKMRFEGD ESPEQRFTGT VVGIEDADPK KWPDSKWRCL KVRWDENSTI PRPDRVSPWK  420
IEPALAPALN LPPVSRQKRP RSCMDPSSPD PSVLAREGHT KIAVDPSPAN GLPRVFQGQE  480
TSTLRAALGE SHESESSNKP QLWNSSMDEK DAISVSRIYH SDKRSALGQT ESSFVDMLSG  540
GGTQMNSASR EHSRPTSNVT ASSRYHQEVE RKHSLAGGNL WPTISPRLSL NLMESCMTTQ  600
DHSADSSYQA QHDERYGAFR DFSSFPNRRC EQPNWLISPA FLHVPPVESR EMIPGQPQDF  660
GKPKDGICKI FGISFTRDSA PLEPVSFPKT SVVEPSSSLR HEILANQAPI LEYDQSKGAK  720
AAVTSSITSS HPVSGAAERE GRGICSSTRS CTKVLKQGTA LGRSVDLTKF CGYQELIAEL  780
DNLFEFNGEL KVRSKNWLVV YTDDEDDMML VGDDPWEEFV RMVRKILILT KEEVQRMNLG  840
SFNSKGEDNS SVGEGVDPKE AKNMPATSSS TP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1583642318354Auxin response factor 1
4ldw_A1e-1583642318354Auxin response factor 1
4ldw_B1e-1583642318354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678446646
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073189.10.0auxin response factor 2-like
SwissprotK4DF010.0ARF2B_SOLLC; Auxin response factor 2B
TrEMBLA0A2G9G3N80.0A0A2G9G3N8_9LAMI; Auxin response factor
STRINGMigut.I00613.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26182444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]