PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678446589
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRF
Protein Properties Length: 454aa    MW: 48429.9 Da    PI: 8.9741
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678446589genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.6e-25173217145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCsr++l+++k+CErH++rgr+rsrk++e 
  678446589 173 DPEPGRCRRTDGKKWRCSRDALADQKYCERHMNRGRHRSRKPVEG 217
                79****************************************985 PP

2QLQ55.12.3e-19106141237
        QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                +FT++Q+++L+ Q+l+yKyL +n+P+P+ Ll +i+k
  678446589 106 PFTPSQWMELEDQALIYKYLTSNVPIPSCLLNPIRK 141
                8********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.8E-10105141IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.26106141IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.0E-14106140IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.686173217IPR014977WRC domain
PfamPF088794.4E-21174216IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDFGAVDLDN FVRCSSTVTV ASNSGGSSFE IDMQKGFVPG FLKQERGVNE QTHSSIQSEG  60
QHQMLSFSSP ASSGTAALPY YHQTSAGFSR LTGLNSAGAF SGMRIPFTPS QWMELEDQAL  120
IYKYLTSNVP IPSCLLNPIR KHLESAVFST FPGLRSNPLG WGASRLGGFS SSDPEPGRCR  180
RTDGKKWRCS RDALADQKYC ERHMNRGRHR SRKPVEGQSG HAATRTTTAM NNKPAAAGTP  240
ATKSVSVSRQ PASVILAAPN FESLLGKEEF GFVSADSAFN PLDRSSALGR SRSNGTSDDK  300
DNNPFRGFMD AWSGGLSDRT QLSISIPIAA ATDFMPSPSS PTSSKLQRSC QEFQMCLAVG  360
SQHKQRQAPN CVPISWEPSM AGPLGEVLHS RTCATRDPLS SHLTSSPTGV LSSSTFGSLS  420
SSSAGSSPRA DSSKALDGAT LSNGTIKTTS LPEF
Cis-element ? help Back to Top
SourceLink
PlantRegMap678446589
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022870904.11e-114growth-regulating factor 1-like isoform X2
TrEMBLA0A061FG661e-110A0A061FG66_THECC; Growth-regulating factor 1
STRINGEOY156571e-111(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-63growth-regulating factor 1