PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678446589 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRF | ||||||||
Protein Properties | Length: 454aa MW: 48429.9 Da PI: 8.9741 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.5 | 6.6e-25 | 173 | 217 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++l+++k+CErH++rgr+rsrk++e 678446589 173 DPEPGRCRRTDGKKWRCSRDALADQKYCERHMNRGRHRSRKPVEG 217 79****************************************985 PP | |||||||
2 | QLQ | 55.1 | 2.3e-19 | 106 | 141 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L+ Q+l+yKyL +n+P+P+ Ll +i+k 678446589 106 PFTPSQWMELEDQALIYKYLTSNVPIPSCLLNPIRK 141 8********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.8E-10 | 105 | 141 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.26 | 106 | 141 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 9.0E-14 | 106 | 140 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.686 | 173 | 217 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.4E-21 | 174 | 216 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MDFGAVDLDN FVRCSSTVTV ASNSGGSSFE IDMQKGFVPG FLKQERGVNE QTHSSIQSEG 60 QHQMLSFSSP ASSGTAALPY YHQTSAGFSR LTGLNSAGAF SGMRIPFTPS QWMELEDQAL 120 IYKYLTSNVP IPSCLLNPIR KHLESAVFST FPGLRSNPLG WGASRLGGFS SSDPEPGRCR 180 RTDGKKWRCS RDALADQKYC ERHMNRGRHR SRKPVEGQSG HAATRTTTAM NNKPAAAGTP 240 ATKSVSVSRQ PASVILAAPN FESLLGKEEF GFVSADSAFN PLDRSSALGR SRSNGTSDDK 300 DNNPFRGFMD AWSGGLSDRT QLSISIPIAA ATDFMPSPSS PTSSKLQRSC QEFQMCLAVG 360 SQHKQRQAPN CVPISWEPSM AGPLGEVLHS RTCATRDPLS SHLTSSPTGV LSSSTFGSLS 420 SSSAGSSPRA DSSKALDGAT LSNGTIKTTS LPEF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678446589 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022870904.1 | 1e-114 | growth-regulating factor 1-like isoform X2 | ||||
TrEMBL | A0A061FG66 | 1e-110 | A0A061FG66_THECC; Growth-regulating factor 1 | ||||
STRING | EOY15657 | 1e-111 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1688 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 2e-63 | growth-regulating factor 1 |