PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678446394 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 28588.1 Da PI: 7.7142 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3.1e-15 | 17 | 63 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+W++ Ed +lv ++++G +W++ ++ g+ R++k+c++rw +yl 678446394 17 GPWSAAEDARLVAFIREHGHTNWRALPKQAGLLRCGKSCRLRWINYL 63 89*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l 678446394 69 RGNFTPQEEKTIIELHNSLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.341 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.71E-29 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-11 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.41E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.316 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-16 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-27 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.95E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGGGRSPCCD KTRVKTGPWS AAEDARLVAF IREHGHTNWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFTPQEEKTI IELHNSLGNK WSKIASHLPG RTDNEIKNVW NTHLKKKKAI 120 AFGKEHYFSS YSSSSSSSCV DVSENGGLIQ PTGERDGEKS KFMTITRAPS EEATTASCST 180 SSPSRVSVSV SVSHWPSEAK MDEDIWAVLD PMDTGSSSCK DDELKRWMAF FECELLMEGD 240 GDEWLRDSQA APLCPLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-26 | 17 | 117 | 8 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678446394 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022028696.1 | 6e-80 | transcription factor MYB58-like | ||||
TrEMBL | A0A251V920 | 1e-78 | A0A251V920_HELAN; Putative myb domain protein 58 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16490.1 | 8e-68 | myb domain protein 58 |