PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678445974

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

GRAS

Protein Properties

Length: 578aa MW: 63435.9 Da PI: 6.7376

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678445974	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	290.6	4.4e-89	206	578	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +++L+e+A a+s+g+ e ++lL+rl + a + + ++l+ y++ AL+ar+ + ++ +p+ +e s+e++aa++l + v P++ +++++aN 678445974 206 KQALIEAAVAISEGKPESGNELLTRLLQEAKAKNnFSEKKLVEYMVSALKARVES----TVGRFPAG--AEGYSDEQAAATRLVYCVPPCFMLGFMAANL 299 689*********************9997777637**************9....33334443..33469999******************* PP GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 aIlea+++ +++H++ f+++qG+Q++ L+++La+ + + + sl iT+++ ke+l+ +g+ L+ +A++ gv+++f++ ++++l+ ++L 678445974 300 AILEATSELsfQKIHVLEFELGQGGQYVHLIRTLAANAkhegKAAMSLTITAFAY-GGAGKESLRLVGDDLRALAANNGVSLRFHI-RDFKIDELSRDKL 397 **99778********************66655544455999999999.3349*********************9.677****** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +++p+EalaVn++++lh+l+desv++e++rd++L+ vk+lsP vv+vveqe+++n++++++r+ +a +yy+al++sl+a lp+++ +r+ + lg ++ 678445974 398 EINPDEALAVNFAFKLHNLPDESVTVENPRDALLRRVKTLSPAVVTVVEQELNTNTAPLVTRVRDAYDYYAALLESLDAILPPDHPDRTRIVDG-LGLKL 496 ****************************************************************************************99.* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +n +aceg+er+er+e ++kWr+rl++aGF+p+p+s++a ++ ++ l+ g+++ + g +++ Wk++pL ++SaWr 678445974 497 TNSIACEGRERVERCEVFGKWRARLSMAGFQPLPVSTRAGESLRAKLNAPTrvTSGFSLSLDAGGICFAWKGKPLAFASAWR 578 ***************************************999998666789************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.612	179	556	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-86	206	578	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MSSGYPADAP DLLYCGGRRP VGAESGGGGC DQFSTQQQQF SLRLPGGQEI PGQIRSGEFM 60 GKRSLMEFQQ NQQAMEFYLR NVRMRANYGY HASPLSRPEL SILRHQTPHN LRVLDTAVEG 120 FGRRVEFGNQ EDSDKSLMNR RLQELERKLL DDEDDGDAAS VVTEREWSEA IRDLISPVQK 180 HLSPSPTSSS SSCTSTSASH PPLCSKQALI EAAVAISEGK PESGNELLTR LLQEAKAKNN 240 FSEKKLVEYM VSALKARVES TVGRFPAGAE GYSDEQAAAT RLVYCVPPCF MLGFMAANLA 300 ILEATSELSF QKIHVLEFEL GQGGQYVHLI RTLAANAKHE GKAAMSLTIT AFAYGGAGKE 360 SLRLVGDDLR ALAANNGVSL RFHIRDFKID ELSRDKLEIN PDEALAVNFA FKLHNLPDES 420 VTVENPRDAL LRRVKTLSPA VVTVVEQELN TNTAPLVTRV RDAYDYYAAL LESLDAILPP 480 DHPDRTRIVD GLGLKLTNSI ACEGRERVER CEVFGKWRAR LSMAGFQPLP VSTRAGESLR 540 AKLNAPTRVT SGFSLSLDAG GICFAWKGKP LAFASAWR

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MSSGYPADAP DLLYCGGRRP VGAESGGGGC DQFSTQQQQF SLRLPGGQEI PGQIRSGEFM  60
GKRSLMEFQQ NQQAMEFYLR NVRMRANYGY HASPLSRPEL SILRHQTPHN LRVLDTAVEG  120
FGRRVEFGNQ EDSDKSLMNR RLQELERKLL DDEDDGDAAS VVTEREWSEA IRDLISPVQK  180
HLSPSPTSSS SSCTSTSASH PPLCSKQALI EAAVAISEGK PESGNELLTR LLQEAKAKNN  240
FSEKKLVEYM VSALKARVES TVGRFPAGAE GYSDEQAAAT RLVYCVPPCF MLGFMAANLA  300
ILEATSELSF QKIHVLEFEL GQGGQYVHLI RTLAANAKHE GKAAMSLTIT AFAYGGAGKE  360
SLRLVGDDLR ALAANNGVSL RFHIRDFKID ELSRDKLEIN PDEALAVNFA FKLHNLPDES  420
VTVENPRDAL LRRVKTLSPA VVTVVEQELN TNTAPLVTRV RDAYDYYAAL LESLDAILPP  480
DHPDRTRIVD GLGLKLTNSI ACEGRERVER CEVFGKWRAR LSMAGFQPLP VSTRAGESLR  540
AKLNAPTRVT SGFSLSLDAG GICFAWKGKP LAFASAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-33	192	578	10	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678445974

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076123.1	0.0	scarecrow-like protein 8
TrEMBL	S8EMR1	0.0	S8EMR1_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.F01094.1.p	1e-169	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4023	24	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	1e-104	SCARECROW-like 8