PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678445935
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 392aa    MW: 43936.8 Da    PI: 7.7684
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678445935genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.4e-20177226255
        AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +++GVr+++ +g+W+AeIrd +     r  r +lg+++taeeAa +++ a+ kl+g
  678445935 177 KFRGVRQRP-WGKWAAEIRDpF-----RrVRLWLGTYDTAEEAAMMYDVAAIKLRG 226
                89*******.**********66.....45*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-29176234IPR001471AP2/ERF domain
SMARTSM003802.3E-37177240IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-21177234IPR016177DNA-binding domain
PfamPF008471.4E-13177226IPR001471AP2/ERF domain
PROSITE profilePS5103224.157177234IPR001471AP2/ERF domain
CDDcd000182.99E-32177234No hitNo description
PRINTSPR003677.0E-10178189IPR001471AP2/ERF domain
PRINTSPR003677.0E-10200216IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MLCFQAIRRL LLPPCWSDDC RSSRYGRLCL LPSSASLHLV VTHVVIEKGS AFSGSCSGGF  60
GLVLILLGRC VLRMGERLLW PVKFTEHKKV AFLKRKKGDG GSEFAPKTVK FYVTDPDATD  120
SSGDDEAGLL PRRRVKKFLS EIKFHAGSAD AALSPKLKKM KGKGETTEPL DREIPRKFRG  180
VRQRPWGKWA AEIRDPFRRV RLWLGTYDTA EEAAMMYDVA AIKLRGPDAL TNFAPPPVKD  240
TAAESNDTSV SSYGSGGELK ALSSPTSVFR YASDQDSEHA PMIKTSKRPE SLCPAATTPP  300
DQYRFTTPAP ADYSSEFSAA EENTHYFNLA VEEDPFFNEL CRYPDDAFPD TTAAIEDVKY  360
YYSVQELSSW HQIDHYFQEP LHLSDSSRRL FF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-18176233462ATERF1
3gcc_A9e-18176233462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678445935
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076033.11e-66ethylene-responsive transcription factor CRF4-like
SwissprotQ9SUE36e-48CRF4_ARATH; Ethylene-responsive transcription factor CRF4
STRINGPGSC0003DMT4000060413e-63(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-50cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]