PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678445865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | CPP | ||||||||
Protein Properties | Length: 691aa MW: 75950.3 Da PI: 6.0245 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50 | 5.9e-16 | 423 | 460 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +++CnCkkskClk+YCeCfaag++C ++C C dC+Nk 678445865 423 CRRCNCKKSKCLKLYCECFAAGVYCVDQCACIDCFNKP 460 789*********************************96 PP | |||||||
2 | TCR | 44.9 | 2.3e-14 | 507 | 541 | 1 | 35 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCed 35 ++k+gCnCk+s ClkkYCeC++ g+ Cs +C+Ce+ 678445865 507 RHKRGCNCKRSGCLKKYCECYQGGVGCSINCRCEG 541 589******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 6.9E-17 | 421 | 462 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 33.87 | 422 | 547 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.7E-12 | 424 | 459 | IPR005172 | CRC domain |
SMART | SM01114 | 5.2E-13 | 507 | 544 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.7E-10 | 509 | 541 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
MASFHLDFGC PSLHSCSWLC SDMTDVESVD DSPVFSFIND LSPIKPLKCN HLSHMMIPLS 60 FSSLPSVFTS PHVSSFRALQ RHQLQDPSTP EFASDSGITV EGSQVNTAKE LDEQEGTIKS 120 SESDGELAVE TSLHCLRFSG GEFPNSSPIH HEVVCESEVD KKGKSLADQN THVMSYEWED 180 FNEALIFESP NDKASCNEKI CPSNQNGVHG IQSFCEDVPN EQQHLSSQPG PGEGMQTAEV 240 PEMEVDTSLN RFGEENPSGI YRGTRRRCLV FEVGCTLRKH MQQPSGSDSS LMLQSETSAF 300 SNDQNLLHMK PGNSPSSHVL PAIGLHLNAL ATTPGVSLSH DLSTPGRLLI GPNSSVNFHF 360 SPSSEVLLNN MLSASLDEEG ENIIVPLEDP YQTSAHMEIE GMNHSSPKKK RRRAEASGNA 420 EGCRRCNCKK SKCLKLYCEC FAAGVYCVDQ CACIDCFNKP VNEHKVLETR KQIESRNPLA 480 FAPKVIRGTN PLAETGDDST ETPASARHKR GCNCKRSGCL KKYCECYQGG VGCSINCRCE 540 GIEPEEIDEA DRVNMTSMLD KNSHKILLEN DSCIPATLLP VGRQLLQQQY SSKPKSARVA 600 SSFPRVGMMF DKQSFHPQPP AKFRHHLETV MEDHETPGFL QGILSSTNCV VKSSSPNGKR 660 VSSPNIITGL RSSRKLILQS IPSFPSLTYD E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 6e-17 | 426 | 543 | 14 | 119 | Protein lin-54 homolog |
5fd3_B | 6e-17 | 426 | 543 | 14 | 119 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 407 | 412 | KKKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678445865 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090684.1 | 0.0 | LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A2G9GVD9 | 0.0 | A0A2G9GVD9_9LAMI; Metallothionein-like protein | ||||
STRING | Migut.G00370.1.p | 1e-175 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2467 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 1e-104 | Tesmin/TSO1-like CXC domain-containing protein |