PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678445811
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 292aa    MW: 32816.5 Da    PI: 7.5316
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678445811genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-1758103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W ++Ed +l+++v+ +G+ +W++Ia++++ gR++k+c++rw++ 
        678445811  58 RGHWKPDEDSKLKELVAVYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 103
                      899*****************************.***********996 PP
2Myb_DNA-binding57.43.4e-18110153146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l  a++++G++ W++Iar ++ gRt++++k++w+ 
        678445811 110 RRAFSEEEEEKLMAAHRLYGNK-WALIARLFP-GRTDNSVKNHWHV 153
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.19153104IPR017930Myb domain
SMARTSM007172.1E-1457106IPR001005SANT/Myb domain
SuperFamilySSF466892.47E-2858151IPR009057Homeodomain-like
PfamPF002498.4E-1758103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2659111IPR009057Homeodomain-like
CDDcd001676.17E-1461102No hitNo description
PROSITE profilePS5129426.623105159IPR017930Myb domain
SMARTSM007172.1E-15109157IPR001005SANT/Myb domain
PfamPF002491.3E-15110152IPR001005SANT/Myb domain
CDDcd001677.29E-13112152No hitNo description
Gene3DG3DSA:1.10.10.604.8E-21112158IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSCSSDSSLV YRDLGCLSID LGADQFPSPG KRTSEGSGGD LKEDFSPKRQ QQKQVFTRGH  60
WKPDEDSKLK ELVAVYGPQN WNLIAEKLQG RSGKSCRLRW FNQLDPRINR RAFSEEEEEK  120
LMAAHRLYGN KWALIARLFP GRTDNSVKNH WHVIMARRYR EQSIASRRRK MRQFIFNTRE  180
HDDEADDDFF GYGPPPANFS GNCGGGVAPP PPSIAYFPGS SSNGSTLNQT PCLVLYPESN  240
TYCNFPSHFT SSTHQHQQQQ EKQQISAVDP STPDDDIGGA PPFIDFLGVG AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32561585107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170SRRRKM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678445811
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070989.16e-84transcriptional activator Myb
SwissprotQ9SEZ49e-72MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2G9I2T95e-86A0A2G9I2T9_9LAMI; Transcription factor, Myb superfamily
STRINGSolyc05g007870.1.16e-77(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-73myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]