PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678445608
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 319aa    MW: 36187 Da    PI: 6.8402
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678445608genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ede+l+ +++++G+g+W+t ++  g+ R++k+c++rw +yl
        678445608 14 KGPWTEDEDEKLLWYIREHGPGNWRTLPKNAGLERCGKSCRLRWMNYL 61
                     79********************************************97 PP

2Myb_DNA-binding56.85.2e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e++++++++lG++ W++Ia++++ gRt++++k++w+++
        678445608  67 RGRFSFEEEEIIIQLHRLLGNK-WSLIASRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-24664IPR009057Homeodomain-like
PROSITE profilePS5129418.906961IPR017930Myb domain
SuperFamilySSF466891.01E-3011108IPR009057Homeodomain-like
SMARTSM007172.8E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-151461IPR001005SANT/Myb domain
CDDcd001671.73E-111661No hitNo description
PROSITE profilePS5129426.59362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-2765116IPR009057Homeodomain-like
SMARTSM007172.0E-1766114IPR001005SANT/Myb domain
PfamPF002493.4E-1667111IPR001005SANT/Myb domain
CDDcd001674.24E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRPPSCDKS GLKKGPWTED EDEKLLWYIR EHGPGNWRTL PKNAGLERCG KSCRLRWMNY  60
LRPDIKRGRF SFEEEEIIIQ LHRLLGNKWS LIASRLPGRT DNEIKNYWNT HIRKRLMKMG  120
IDPVTHAPRL DFFDLSSLLV APRLDVSSVL HLQALLNNTN PQMMKLALAL LQTSHESPYT  180
LLKKLQETQL SQPKCPLQNH APFVQLPPNP IENACSQPIP SCFDNSTQSF PGTPLDSALH  240
TFQETNFYDH RIPDETSSFH GGSSSERNMN SSCKTVFSAP LSSPDTWNSS SAVIGAAALE  300
EENNFCSSIF GLEDMEEFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-30121162105C-Myb DNA-Binding Domain
1msf_C9e-30121162105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678445608
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079047.11e-104transcription factor MYB39-like
TrEMBLA0A1U8BLQ44e-98A0A1U8BLQ4_NELNU; transcription factor MYB39
STRINGXP_010277911.17e-99(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-86MYB-like 102