PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678445608 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 319aa MW: 36187 Da PI: 6.8402 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l+ +++++G+g+W+t ++ g+ R++k+c++rw +yl 678445608 14 KGPWTEDEDEKLLWYIREHGPGNWRTLPKNAGLERCGKSCRLRWMNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.8 | 5.2e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e++++++++lG++ W++Ia++++ gRt++++k++w+++ 678445608 67 RGRFSFEEEEIIIQLHRLLGNK-WSLIASRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-24 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.906 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.73E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.593 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.24E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MGRPPSCDKS GLKKGPWTED EDEKLLWYIR EHGPGNWRTL PKNAGLERCG KSCRLRWMNY 60 LRPDIKRGRF SFEEEEIIIQ LHRLLGNKWS LIASRLPGRT DNEIKNYWNT HIRKRLMKMG 120 IDPVTHAPRL DFFDLSSLLV APRLDVSSVL HLQALLNNTN PQMMKLALAL LQTSHESPYT 180 LLKKLQETQL SQPKCPLQNH APFVQLPPNP IENACSQPIP SCFDNSTQSF PGTPLDSALH 240 TFQETNFYDH RIPDETSSFH GGSSSERNMN SSCKTVFSAP LSSPDTWNSS SAVIGAAALE 300 EENNFCSSIF GLEDMEEFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 9e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 9e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678445608 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079047.1 | 1e-104 | transcription factor MYB39-like | ||||
TrEMBL | A0A1U8BLQ4 | 4e-98 | A0A1U8BLQ4_NELNU; transcription factor MYB39 | ||||
STRING | XP_010277911.1 | 7e-99 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-86 | MYB-like 102 |