PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678445448
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 324aa    MW: 35893.9 Da    PI: 9.6838
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678445448genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.18.7e-1394138147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++v+a +++  + Wk+I + +g  +t  q++s+ qky
        678445448  94 RESWTEPEHDKFVEALQLFERD-WKKIEAFIG-SKTVIQIRSHAQKY 138
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1688144IPR009057Homeodomain-like
PROSITE profilePS5129414.08989143IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-692144IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-1792141IPR006447Myb domain, plants
SMARTSM007172.9E-993141IPR001005SANT/Myb domain
PfamPF002492.8E-1094138IPR001005SANT/Myb domain
CDDcd001671.20E-796139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MVFSFSLIRL PVAGAAYLTL VWGQEAYASI PPFSRRMVSL NSNPPEAIFH LDPSGMALPE  60
LDSLSSPVPG SSKDAALEDP SKKVRKPYTI TKSRESWTEP EHDKFVEALQ LFERDWKKIE  120
AFIGSKTVIQ IRSHAQKYFL KVQKSGTHEH LPPPRPKRKA AHPYPQKATK IEVPSAQTST  180
SVPDPRSLWR PDSSAAHLHP EAALTASSWT GKPVKGESGY VGQPLLNVYS SGSIESTPRT  240
KTAVLPDFGQ VYSFIGSIFD PNTSGHLQKL KKMDAIDIET VLLLMRNLSF NLASPEFEHH  300
RRLLSSYEVD ASDPITRIPS QNAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678445448
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076102.11e-134protein REVEILLE 6 isoform X3
RefseqXP_020549267.11e-134protein REVEILLE 6 isoform X4
SwissprotQ8H0W32e-98RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2G9GHV31e-137A0A2G9GHV3_9LAMI; Zuotin
STRINGMigut.F00285.1.p1e-123(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.13e-86MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]