PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678445398
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 699aa    MW: 77364.7 Da    PI: 6.6682
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678445398genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.9e-192479156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               +++ +++t+eq+++Le++F+ +++p++++r  L+++lgL  rq+k+WFqNrR+++k
  678445398 24 KKRYHRHTAEQIQRLERMFKDCPHPDEKTRNLLSRELGLHPRQIKFWFQNRRTQMK 79
               678899***********************************************998 PP
2START162.72.7e-512234402206
                HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEEECTT..EE CS
      START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddke...qWdetlakaetlevissg..ga 90 
                +a  a++el+++  ++ep Wvk s    e++  + ++  f++ k+   ++ea+r+sgvv+ ++  lv  ++d ++    + + + +a t+evissg  g+
  678445398 223 YAAGALDELIRLLHSNEPIWVKPSsdsrEILSLEAYYGLFSRPKNpnARIEASRDSGVVIINSLALVDMFMDANKfvdLFPTIVSRARTVEVISSGqsGT 322
                677899****************9999999999********99888999**************************88888888888*************** PP

                EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHH CS
      START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksg 188
                l lm+ elq+ls lvp R  +f+R+++q + g+w+ivdvS d+ q+ +  ss  +a++lpSg+li++ +ng+skvtwveh++ +++ p h+l r +++sg
  678445398 323 LLLMYEELQLLSALVPtRQLYFLRFCQQIEPGSWAIVDVSYDVSQQESHFSSPCKAHRLPSGCLIQDAQNGYSKVTWVEHWEIEDKAPiHQLCRDIIQSG 422
                **********************************************99988889********************************************** PP

                HHHHHHHHHHHTXXXXXX CS
      START 189 laegaktwvatlqrqcek 206
                 a+ga++w+a lqr ce+
  678445398 423 FAFGAQRWLASLQRVCER 440
                ****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.04E-191081IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-221183IPR009057Homeodomain-like
PROSITE profilePS5007117.3622181IPR001356Homeobox domain
SMARTSM003894.0E-192285IPR001356Homeobox domain
CDDcd000868.42E-192382No hitNo description
PfamPF000466.1E-172479IPR001356Homeobox domain
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
SuperFamilySSF559612.47E-30213441No hitNo description
PROSITE profilePS5084847.685213443IPR002913START domain
CDDcd088751.33E-100217439No hitNo description
SMARTSM002342.8E-43222440IPR002913START domain
PfamPF018523.8E-42224440IPR002913START domain
SuperFamilySSF559612.12E-16456691No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MEFSGGGASS GGDHQEGSDS HRRKKRYHRH TAEQIQRLER MFKDCPHPDE KTRNLLSREL  60
GLHPRQIKFW FQNRRTQMKA QHERADNCAL RAENDKIRCE NIAIREALKN VICPTCGGPP  120
VSEDSFFDEQ KLRIENAQLK QELDRVSSIA AKYMGRPIAQ LPPMQPIHVS SLDLSMGSFV  180
GHGIPGPSLD LDLLPGSSSS GITDLPFPPM SFTDMDKSIM AEYAAGALDE LIRLLHSNEP  240
IWVKPSSDSR EILSLEAYYG LFSRPKNPNA RIEASRDSGV VIINSLALVD MFMDANKFVD  300
LFPTIVSRAR TVEVISSGQS GTLLLMYEEL QLLSALVPTR QLYFLRFCQQ IEPGSWAIVD  360
VSYDVSQQES HFSSPCKAHR LPSGCLIQDA QNGYSKVTWV EHWEIEDKAP IHQLCRDIIQ  420
SGFAFGAQRW LASLQRVCER FSLMISGSSA RELGGGKRSM MKLAQRMVNY FCSSINPPNG  480
QQLNTLSATH DFEVRTTVHR STEPGQRNGV IISASATIWL PVSPLNVFNF LRDERCRPQW  540
DVLSNQNPVE EIAHILNGSH PGNCISVLRG YNTSQNNMLI LQESCTDSSG SLVVYCPVDL  600
QAIHIAMSGE DPSYIPLLPS GFTIYSDCRP GNDAGTAADG ASTSTNTSPP SGSLVTIVFQ  660
ILVSSLPSAR MSHESVATVN NLISSTVNQI KTSLNITPS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678445398
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072039.10.0homeobox-leucine zipper protein HDG11
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLA0A2G9HPI80.0A0A2G9HPI8_9LAMI; Uncharacterized protein
STRINGMigut.O00242.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24902351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Cai XT,Xu P,Wang Y,Xiang CB
    Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
    J Integr Plant Biol, 2015. 57(12): p. 1017-30
    [PMID:25752924]
  5. Yu LH, et al.
    Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
    Plant Biotechnol. J., 2016. 14(1): p. 72-84
    [PMID:25879154]
  6. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  7. Liu Y, et al.
    Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza.
    Protoplasma, 2017. 254(4): p. 1617-1625
    [PMID:27915455]
  8. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  9. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  10. Zheng G, et al.
    Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.).
    Front Plant Sci, 2017. 8: p. 2125
    [PMID:29326737]