PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678445352 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | G2-like | ||||||||
Protein Properties | Length: 327aa MW: 36067.7 Da PI: 8.3149 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107 | 1.1e-33 | 40 | 94 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFveav+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl 678445352 40 KPRLRWTVELHERFVEAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 94 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.694 | 37 | 97 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-32 | 37 | 95 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.14E-17 | 39 | 95 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.6E-24 | 40 | 95 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.6E-8 | 42 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.3E-25 | 133 | 179 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
AATEMFQGSQ KKPSASGVNS HDRAMCVQGD SGLVLTTDPK PRLRWTVELH ERFVEAVTQL 60 GGPDKATPKT IMRVMGVKGL TLYHLKSHLQ KFRLGKQPHK DFADHSMKDE LQRNNMASAG 120 MLGHGLNGGS NAHISDAIRM QMEVNRRLHE QLEVQRHLQL RIEAQGKYMQ TILEKACQTL 180 AGENVTAAPG GYNRAAIGRD VHGLKELDPG INYSTIQDLN IYLSSDQLDQ VPGHHHHLSN 240 VESFLGGHET LSRKKRSNPY SESHSGSVGK APFIWADDLR LQGLRTAPST SSMDEHPRTH 300 ISPITGDRSG GELDPVTDIF DSKPLMA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-19 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-19 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-19 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-19 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678445352 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095765.1 | 1e-143 | myb family transcription factor APL isoform X2 | ||||
Swissprot | Q9SAK5 | 7e-95 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A2G9G9Z5 | 1e-127 | A0A2G9G9Z5_9LAMI; Uncharacterized protein | ||||
STRING | EOY14310 | 1e-127 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7942 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.2 | 3e-97 | G2-like family protein |
Publications ? help Back to Top | |||
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