PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678445090

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HD-ZIP

Protein Properties

Length: 725aa MW: 79538.9 Da PI: 5.9307

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678445090	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.5e-19	57	112	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r++L ++lgL+ q+k+WFqN+R+++k 678445090 57 KKRYHRHTQHQIQEMEAFFNECPHPDDKQRKDLGRRLGLEPLQIKFWFQNKRTQMK 112 688999***********************************************998 PP
2	START	210.8	5.1e-66	245	465	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 ela +a++el+++a+++ep+Wv + e + +de++++f+++ ++ea+r+s++v+m++++lve+l+d++ qW+ + +a+t+ev+s+ 678445090 245 ELAVAAMEELIRMAQSSEPLWVPGPdglsETLSEDEYVRSFSRGIMpkplgMKTEASRESAAVIMNHMNLVEILMDVN-QWSSVFSsivsRAATIEVLST 343 57899******************99999*******99999****************************.***************** PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180 g ga q+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ + + R +++pSg+li++++ng+skvtwvehv++++r +h++ 678445090 344 GvagnynGAFQVMTAEFQVPSPLVPtRENYFVRYCKQHPDGTWAVVDVSLDNLRSTS----LPRYRRRPSGCLIQELPNGYSKVTWVEHVEVDDRAVHSI 439 ***************************************************87....455556***************************** PP HHHHHHHHHHHHHHHHHHHTXXXXXX CS START 181 lrslvksglaegaktwvatlqrqcek 206 ++ lv+sgla+gak+wvatl+rqc++ 678445090 440 YKLLVNSGLAFGAKRWVATLRRQCAR 465 **********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-21	36	112	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.77E-18	47	114	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.034	54	114	IPR001356	Homeobox domain
SMART	SM00389	6.1E-18	55	118	IPR001356	Homeobox domain
Pfam	PF00046	5.4E-17	57	112	IPR001356	Homeobox domain
CDD	cd00086	1.76E-17	57	115	No hit	No description
PROSITE profile	PS50848	45.75	236	468	IPR002913	START domain
SuperFamily	SSF55961	8.65E-37	236	466	No hit	No description
CDD	cd08875	2.17E-125	240	464	No hit	No description
SMART	SM00234	6.6E-64	245	465	IPR002913	START domain
Pfam	PF01852	1.3E-55	246	465	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	1.4E-6	315	466	IPR023393	START-like domain
SuperFamily	SSF55961	1.33E-27	486	717	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence Send to blast
MFQPSMFDSL GSHHQLHKAP ENDLDLIRGD DEHESKSGTD IMDGEDGKDP NQRPSKKKRY 60 HRHTQHQIQE MEAFFNECPH PDDKQRKDLG RRLGLEPLQI KFWFQNKRTQ MKAQHERHEN 120 SQLRSENEKL RAENIRYKDA LSNATCPNCG GPATIGEMSF DEQHLRIENV RLREEIDRIS 180 GIAAKCVGKP MLSYPHLPAG ATASLDLGVG NFGQQTGLTG EIFGAADLLR SVSGQTEADK 240 TMMIELAVAA MEELIRMAQS SEPLWVPGPD GLSETLSEDE YVRSFSRGIM PKPLGMKTEA 300 SRESAAVIMN HMNLVEILMD VNQWSSVFSS IVSRAATIEV LSTGVAGNYN GAFQVMTAEF 360 QVPSPLVPTR ENYFVRYCKQ HPDGTWAVVD VSLDNLRSTS LPRYRRRPSG CLIQELPNGY 420 SKVTWVEHVE VDDRAVHSIY KLLVNSGLAF GAKRWVATLR RQCARLTSFM ENHIPAGEVG 480 GVITSPEGRK SMLKLAERMV MSFCNGVGAS TAHTWTTLSG SGADDVRVMT RKSIDDPGRP 540 PGIVLSAATS FWIPVPPARV FDFLRDENSR SEWDILSNGG LVQEMAHISN DRDPNNAVSL 600 LRVNSTNSSQ SNMLILQESS TDSTGSYVIY APVDIDAMNM VLSGGDPDYV ALLPSGFAIL 660 PDGPNGPAGG NPDVGSGSSL LTVAFQILVD SVPTAKLSLG SIATVNNLIK CTVERIKGAV 720 LCDGA

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence Send to blast

MFQPSMFDSL GSHHQLHKAP ENDLDLIRGD DEHESKSGTD IMDGEDGKDP NQRPSKKKRY  60
HRHTQHQIQE MEAFFNECPH PDDKQRKDLG RRLGLEPLQI KFWFQNKRTQ MKAQHERHEN  120
SQLRSENEKL RAENIRYKDA LSNATCPNCG GPATIGEMSF DEQHLRIENV RLREEIDRIS  180
GIAAKCVGKP MLSYPHLPAG ATASLDLGVG NFGQQTGLTG EIFGAADLLR SVSGQTEADK  240
TMMIELAVAA MEELIRMAQS SEPLWVPGPD GLSETLSEDE YVRSFSRGIM PKPLGMKTEA  300
SRESAAVIMN HMNLVEILMD VNQWSSVFSS IVSRAATIEV LSTGVAGNYN GAFQVMTAEF  360
QVPSPLVPTR ENYFVRYCKQ HPDGTWAVVD VSLDNLRSTS LPRYRRRPSG CLIQELPNGY  420
SKVTWVEHVE VDDRAVHSIY KLLVNSGLAF GAKRWVATLR RQCARLTSFM ENHIPAGEVG  480
GVITSPEGRK SMLKLAERMV MSFCNGVGAS TAHTWTTLSG SGADDVRVMT RKSIDDPGRP  540
PGIVLSAATS FWIPVPPARV FDFLRDENSR SEWDILSNGG LVQEMAHISN DRDPNNAVSL  600
LRVNSTNSSQ SNMLILQESS TDSTGSYVIY APVDIDAMNM VLSGGDPDYV ALLPSGFAIL  660
PDGPNGPAGG NPDVGSGSSL LTVAFQILVD SVPTAKLSLG SIATVNNLIK CTVERIKGAV  720
LCDGA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678445090

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096101.1	0.0	homeobox-leucine zipper protein MERISTEM L1
Refseq	XP_011096102.1	0.0	homeobox-leucine zipper protein MERISTEM L1
Refseq	XP_011096103.1	0.0	homeobox-leucine zipper protein MERISTEM L1
Refseq	XP_020554106.1	0.0	homeobox-leucine zipper protein MERISTEM L1
Refseq	XP_020554107.1	0.0	homeobox-leucine zipper protein MERISTEM L1
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A2G9GCJ2	0.0	A0A2G9GCJ2_9LAMI; Uncharacterized protein
STRING	Migut.M01293.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA932	24	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21750.2	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]