PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678445047
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 303aa    MW: 32813.5 Da    PI: 10.1421
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678445047genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI +  +       R+  ++k++w++
        678445047  5 KQKWTPEEEAALKAGVLKHGPGKWRTILKDPQfsgvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.658158IPR017930Myb domain
SuperFamilySSF466891.51E-15268IPR009057Homeodomain-like
SMARTSM007174.9E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-14456IPR009057Homeodomain-like
PfamPF002493.4E-9555IPR001005SANT/Myb domain
CDDcd116607.47E-19656No hitNo description
SuperFamilySSF467852.29E-14117197IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005265.3E-9118183IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.7E-12120190IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.103120188IPR005818Linker histone H1/H5, domain H15
PfamPF005385.7E-6125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALKAGV LKHGPGKWRT ILKDPQFSGV LYLRSNVDLK DKWRNMSVMA  60
NGWGSRERAR LALKRMHPAP KQGESSAALS AISQSDDDMV DTRTHGSSGG SPPTDVPKRS  120
IMRLDNLVME AINNLREPGG SNKTSIAAYI EDQYLAPPNF KRILSAKLRH LSLTGKLIKM  180
KRKYKIATVS TSSDRKRNPS IPVEGKQRTS PRIAALDEDS CITKSLIDLD LAKMRTMTPE  240
EAAAAAAQAV AEAEAAIAEA EEAAREAEAA EAEAEAAQAF AEAALKTLKT KTSPKMASPV  300
IQA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678445047
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088080.11e-146telomere repeat-binding factor 1 isoform X1
RefseqXP_020552115.11e-146telomere repeat-binding factor 1 isoform X1
SwissprotQ8VWK44e-96TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A0K1SB851e-142A0A0K1SB85_REHGL; Single MYB histone protein
STRINGMigut.B00451.1.p1e-130(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-97telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]