PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678444962
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 326aa    MW: 35981.6 Da    PI: 6.1814
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678444962genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-091546132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+WT eEd++l+ +++++G g+W++ +++ g
        678444962 15 KGPWTREEDQKLLAYIEEHGHGSWRSLPAKAG 46
                     79************************999877 PP
2Myb_DNA-binding27.95.5e-09971202246
                      T-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqk 46 
                      ++W++Ia++++ +Rt++++k++w++
        678444962  97 RRWSAIAAHLP-KRTDNEIKNYWNT 120
                      38*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.76710122IPR017877Myb-like domain
SuperFamilySSF466899.33E-81343IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-111346IPR009057Homeodomain-like
SMARTSM007171.3E-1614124IPR001005SANT/Myb domain
PfamPF002499.9E-81546IPR001005SANT/Myb domain
CDDcd001672.29E-717122No hitNo description
Gene3DG3DSA:1.10.10.609.1E-1395133IPR009057Homeodomain-like
SuperFamilySSF466898.97E-895130IPR009057Homeodomain-like
PfamPF002494.1E-797120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGKPSSPAKE EELKKGPWTR EEDQKLLAYI EEHGHGSWRS LPAKAGAHLF IFGFGGLWVG  60
FERVCCDGFR ASAVWEELPA AVDELSPAGY QEREVHRRWS AIAAHLPKRT DNEIKNYWNT  120
RLKKRLTRMG IDPVTHKPKT SSGGAAQSKH AATLSHMAQW ETARLEAEAR LARESKIISS  180
LQLLHKVIIP PLSQPPPFFQ MPTAAPCLDV LKVWQATAPN NCFFGAQSTL ESPTSTLNFS  240
SGSAATTAPI AATAAANAND TTAATTYDMD YCEFKFADAP EMGVLSDPSD CYHMSSDATY  300
LEQDDTRSYW NELLNMVTSP MELPGF
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678444962
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071274.13e-87transcription factor MYB28-like isoform X2
SwissprotQ9LE631e-58MY106_ARATH; Transcription factor MYB106
TrEMBLA0A059PRK94e-89A0A059PRK9_SALMI; MYB-related transcription factor
TrEMBLA0A2G9H7051e-88A0A2G9H705_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.L01264.1.p4e-79(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.12e-50myb domain protein 106