PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678444851

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

GRF

Protein Properties

Length: 348aa MW: 39686 Da PI: 7.4626

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678444851	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.9	4.7e-25	100	143	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e 678444851 100 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 143 79***************************************986 PP
2	QLQ	60.9	3.5e-21	11	46	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+q+L++Q+l+yKyL++++P+Pp+Ll+ i++ 678444851 11 PFTPSQWQELEHQALVYKYLISGMPIPPDLLFSIRR 46 9*******************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.2E-13	10	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	8.9E-16	11	45	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.13	11	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.941	100	144	IPR014977	WRC domain
Pfam	PF08879	3.2E-21	101	143	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MMSANARPRY PFTPSQWQEL EHQALVYKYL ISGMPIPPDL LFSIRRSFDS SRFLLQQSPH 60 TGNLFFVNFN VFIDASFHDA LSVFAVGWSS FHMCFGRKID PEPGRCRRTD GKKWRCSKEA 120 YPDSKYCERH MHRGRNRSRK PVEILSSSSS SHAPPPPPPP PSADSVHVST PGIHSQTPNL 180 IFPEFSYSRP EEAITTNFFL DSNSSSRSSP HDFRTKYGNG SEERSFFSES LSNSGGMRSV 240 TASNDCYWKL GIGSSLSHMH QQQQNSDNSS DTQTGMNKVH SIKDQSCGQQ KHDYFDCESF 300 AEQPKKVMHL FLDEWGVKEE EHEVDDRSSA ARSQIPNSLH DFFINPKW

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MMSANARPRY PFTPSQWQEL EHQALVYKYL ISGMPIPPDL LFSIRRSFDS SRFLLQQSPH  60
TGNLFFVNFN VFIDASFHDA LSVFAVGWSS FHMCFGRKID PEPGRCRRTD GKKWRCSKEA  120
YPDSKYCERH MHRGRNRSRK PVEILSSSSS SHAPPPPPPP PSADSVHVST PGIHSQTPNL  180
IFPEFSYSRP EEAITTNFFL DSNSSSRSSP HDFRTKYGNG SEERSFFSES LSNSGGMRSV  240
TASNDCYWKL GIGSSLSHMH QQQQNSDNSS DTQTGMNKVH SIKDQSCGQQ KHDYFDCESF  300
AEQPKKVMHL FLDEWGVKEE EHEVDDRSSA ARSQIPNSLH DFFINPKW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678444851

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093817.1	3e-87	growth-regulating factor 1 isoform X1
Refseq	XP_020553366.1	3e-87	growth-regulating factor 1 isoform X2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA743	23	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	9e-43	growth-regulating factor 5