PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678443685 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | AP2 | ||||||||
Protein Properties | Length: 586aa MW: 64473.1 Da PI: 7.2455 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.2 | 1.7e-12 | 232 | 288 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g 678443685 232 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 288 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 46.7 | 8.1e-15 | 355 | 406 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g 678443685 355 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 406 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-9 | 232 | 288 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-14 | 232 | 297 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.61E-18 | 232 | 297 | No hit | No description |
PROSITE profile | PS51032 | 16.937 | 233 | 296 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-20 | 233 | 302 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-11 | 233 | 296 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.08E-25 | 355 | 416 | No hit | No description |
Pfam | PF00847 | 1.2E-9 | 355 | 406 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-17 | 355 | 416 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.5E-34 | 356 | 420 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.019 | 356 | 414 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-18 | 356 | 414 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 586 aa Download sequence Send to blast |
MKPMSEENGW LGFSLSPHMN MEAANPNLES RLTEASSASA MAYLSSFSNP QNSDFPSTSS 60 SSLSMLPLKS DGSLCLLGGM VPSSPKLEDF LGGATMAAHE AMVLSLDSVF YGHEAFSGQP 120 HLVGRIPAIT VDEMQFHKTW SDQHQLFPLP ITITSNNNSD SSTMMVPNGG PSRDIQQSLS 180 LSMSPGSQSS CVTATRQISP TECMPKKRGS EKLAQKQTVH RKSIDTFGQR TSQYRGVTRH 240 RWTGRYEAHL WDNSCKKEGQ TRKGRQGGYD MEEKAARAYD LAALKYWGPS THINFAVRVK 300 LSFTIGFFVE FPEVFDVLVQ LENYHQELEE MKNMTRQEYV AHLRRKSSGF SRGASIYRGV 360 TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGVNAV TNFDISRYEV 420 DKIMSSSSLP SGGEVVRRNK MDNCPQPNST DWKIVLGDQP NDAILEPPPI RESSSHQYPN 480 PPAFAVGLHD LVGAHHCSNG GAPPHFSNPS SLVTSLNSSR EGSPEGYRGG GHQNLKTEAE 540 AVGSSNMLLL NSNAAAAANA WISPPELRHE PLTTLNLPFF AAWNDT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678443685 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074331.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-141 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A0G2SJF0 | 0.0 | A0A0G2SJF0_SALMI; AP12/EREBP Transcription Factors | ||||
STRING | Gorai.010G028100.1 | 1e-180 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-117 | AP2 family protein |