PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678443297 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | Whirly | ||||||||
Protein Properties | Length: 312aa MW: 34407.4 Da PI: 9.4104 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 154.7 | 3e-48 | 144 | 272 | 22 | 138 |
Whirly 22 dsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnls........... 110 +sg++k++r+G++ll++a+ +++r+ydW++kq+f+ls+te++++++l++++s effhdp++++s+eG+vrk+lkvePlpd sG+f+nls 678443297 144 QSGAFKISREGFVLLQFAPGVGTRQYDWSRKQVFSLSVTEIGTIISLGARDSFEFFHDPFKGKSDEGRVRKVLKVEPLPDRSGHFFNLStplfllqilfs 243 69*************************************************************************************9855555555555 PP Whirly 111 .vtnslvkgnesfsvPvskaefavlrsll 138 v+n+l++++es+++P++kae avl s + 678443297 244 gVQNKLTNVDESIYIPITKAELAVLVSSF 272 5799********************98866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.6E-8 | 82 | 115 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 4.55E-7 | 87 | 118 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 8.4E-45 | 143 | 269 | IPR013742 | Plant transcription factor |
Gene3D | G3DSA:2.30.31.10 | 5.4E-54 | 143 | 295 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 8.63E-53 | 143 | 312 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MLTPSLSANP TGRAWFLNSG LSSNIPAAPS VIFLPGRKGE ACAITPHGKR QFVVNAQCLT 60 PKEQNQHQQG FSNYESSLPA QPGQMPSRVY VGFSVYKGKA ALTVEPRPPE FSPLGVSYSM 120 LFFILSVCSA FLFRLNCFIT VPEQSGAFKI SREGFVLLQF APGVGTRQYD WSRKQVFSLS 180 VTEIGTIISL GARDSFEFFH DPFKGKSDEG RVRKVLKVEP LPDRSGHFFN LSTPLFLLQI 240 LFSGVQNKLT NVDESIYIPI TKAELAVLVS SFKFIVPHLL GWNTFANAVR PDESGHVGSA 300 NPTNAAELEW NR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 8e-91 | 88 | 311 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 8e-91 | 88 | 311 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 8e-91 | 88 | 311 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 8e-91 | 88 | 311 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678443297 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087065.2 | 1e-119 | single-stranded DNA-binding protein WHY1, chloroplastic | ||||
Swissprot | Q9LL85 | 4e-92 | WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A022QN47 | 1e-106 | A0A022QN47_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L01333.1.p | 1e-107 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7731 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 3e-93 | ssDNA-binding transcriptional regulator |