PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678443163
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 278aa    MW: 31508.7 Da    PI: 8.4446
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678443163genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.6e-092166346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++  a + + ++   +W+ +a++++ g+t  ++++ +  
        678443163 21 KWTPEENKKFESALAFFDKDtpdRWHNVASMIP-GKTVHDVIHQYKE 66
                     8********************************.*********9975 PP
2Myb_DNA-binding46.39.7e-15138182347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
        678443163 138 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 182
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.4761772IPR017884SANT domain
SMARTSM007174.4E-101870IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-122075IPR009057Homeodomain-like
PfamPF002496.3E-82166IPR001005SANT/Myb domain
CDDcd001672.02E-72168No hitNo description
Gene3DG3DSA:1.10.10.609.4E-52169IPR009057Homeodomain-like
PROSITE profilePS5129420.824131187IPR017930Myb domain
SuperFamilySSF466891.42E-17133187IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-18134186IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.6E-12135181IPR009057Homeodomain-like
SMARTSM007173.5E-13135185IPR001005SANT/Myb domain
PfamPF002493.5E-12138182IPR001005SANT/Myb domain
CDDcd001679.54E-11138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MNRDLGEAAN WLFEENYKFS KWTPEENKKF ESALAFFDKD TPDRWHNVAS MIPGKTVHDV  60
IHQYKELVDD ITNIEAGRIP LPGYVNNTFT LDWVNANSSN NASGYKHFHG YGEKRASSSS  120
SSYSRCSNID HERKKGVPWT EEEHRQFLLG LKKYGKGDWR NISRNFVTTR TPTQVASHAQ  180
KYFIRQHSAG KDKRRSSIHD ITTVSIEDTK WPSSQPDKES PAAGYSGATM SHVEPQGNSS  240
GYGADLQGRH SQLEFTTPHG LHLGHHRNVF PMNPTGDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1822841173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678443163
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094978.11e-109transcription factor DIVARICATA-like
SwissprotQ8S9H79e-85DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2G9I5K71e-107A0A2G9I5K7_9LAMI; Zuotin
STRINGSolyc09g014250.2.12e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-96MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]