PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678442830

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HD-ZIP

Protein Properties

Length: 265aa MW: 30557.1 Da PI: 4.7408

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678442830	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.4e-19	63	116	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q++ Le++F ++++ +++ ++A++lgL+ rq+++WFqNrRa++k 678442830 63 KKRRLSMDQVQFLEKCFIADNKLEPDRKLQIARELGLQPRQITIWFQNRRARWK 116 56689************************************************9 PP
2	HD-ZIP_I/II	124.7	4.1e-40	62	152	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls +qv++LE++F +++kLep+rK ++areLglqprq+ +WFqnrRAR+kt+qlE+dyeaL+r+y++lk+e ++L +++e+L++e+ 678442830 62 EKKRRLSMDQVQFLEKCFIADNKLEPDRKLQIARELGLQPRQITIWFQNRRARWKTRQLETDYEALHRSYETLKAEYDNLFSDHEKLKAEI 152 69**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.71E-19	42	120	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.665	58	118	IPR001356	Homeobox domain
SMART	SM00389	1.9E-18	61	122	IPR001356	Homeobox domain
CDD	cd00086	1.00E-16	63	119	No hit	No description
Pfam	PF00046	2.0E-16	63	116	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.5E-18	68	116	IPR009057	Homeodomain-like
PRINTS	PR00031	1.9E-5	89	98	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.9E-5	98	114	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.7E-12	119	156	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MASQIGMVNR SKNARVTSPN HHRGSGAILN FGASTVGNSF IYPFDPEENG DEFLDEFLSQ 60 PEKKRRLSMD QVQFLEKCFI ADNKLEPDRK LQIARELGLQ PRQITIWFQN RRARWKTRQL 120 ETDYEALHRS YETLKAEYDN LFSDHEKLKA EILYLKTTSE PELQPQGYEQ SSRSATAEDQ 180 VSAMISRNEP RGSVISDVVY EESLLFAGGM SYTLEPGHPN QIPNLEDEFQ RPEYILSRVE 240 VSHYLPNGFF LEFPVEDPLP GCWSE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678442830

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087214.1	2e-65	homeobox-leucine zipper protein HAT5
Swissprot	Q8LC03	4e-37	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A2G9G9Z3	2e-61	A0A2G9G9Z3_9LAMI; Transcription factor HEX
STRING	Migut.D01856.1.p	3e-61	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA825	24	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	2e-39	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]