PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678442268
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 334aa    MW: 36469.4 Da    PI: 8.4781
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678442268genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+ +++q G g+W++ +++ g+ R++k+c++rw +yl
        678442268 14 KGPWTREEDQKLLAYIEQNGHGSWRSLPAKAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.93.5e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++ E++ +++++++lG++ W++Ia++++ +Rt++++k++w++
        678442268  67 RGKFSAHEEKTIIRLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-23864IPR009057Homeodomain-like
PROSITE profilePS5129424.328965IPR017930Myb domain
SuperFamilySSF466896.36E-2912108IPR009057Homeodomain-like
SMARTSM007171.4E-121363IPR001005SANT/Myb domain
PfamPF002499.0E-151461IPR001005SANT/Myb domain
CDDcd001671.24E-101661No hitNo description
Gene3DG3DSA:1.10.10.609.4E-2665116IPR009057Homeodomain-like
SMARTSM007175.7E-1666114IPR001005SANT/Myb domain
PROSITE profilePS5129418.89466116IPR017930Myb domain
PfamPF002495.6E-1567110IPR001005SANT/Myb domain
CDDcd001677.85E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGTPDSPAKE ELKKGPWTRE EDQKLLAYIE QNGHGSWRSL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SAHEEKTIIR LHALLGNRWS AIAAHLPKRT DNEIKNYWNT RLKKRLTRMG  120
IDPVTHKPKS NSGGVAQSKQ AANLSHMAQW ETARLEAEAR LARESKIISN LQLLHKSIMP  180
PAPPLRVSSP PCLDVLKVWQ ATGGASSNCF FSSQTVLESP TSTLNFPSAA VVPTIIANDV  240
MAAAAAGTST GSCEIGSLSC GGNMDELGSF QQLDFGGYIS DAVDLAVPNN SSGDCYNGIP  300
SVGETPAFLE MEDTRNYWNE LLSMVSSPME LPGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28111164108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678442268
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071274.11e-130transcription factor MYB28-like isoform X2
SwissprotQ9LE637e-98MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2G9H7051e-133A0A2G9H705_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.L01264.1.p1e-123(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.17e-87myb domain protein 106