PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678441906 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 257aa MW: 29253.4 Da PI: 9.2921 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.2 | 1.6e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+++ rqvtfskRr+g++KK +ELS+LCda++ +i+fss+gkl ey + 678441906 9 KRIESTTSRQVTFSKRRAGLMKKTHELSILCDAQIGLIVFSSKGKLTEYTT 59 79***********************************************75 PP | |||||||
2 | K-box | 54.2 | 6.1e-19 | 94 | 172 | 14 | 92 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 +e+++qela++kke+ nL+ ++ +++G+dL s ++ eL+++eqqLe+s+ k+Rs+K +ll+eq+++l++ ++q +++ 678441906 94 NEQMYQELARMKKETLNLELSLQRYKGDDLCSVQFDELNRIEQQLEHSVLKVRSRKFQLLHEQLDNLKRTLMSNQLQKQ 172 689*****************************************************************99888877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.515 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.15E-40 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-30 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.334 | 94 | 181 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.1E-15 | 94 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0019252 | Biological Process | starch biosynthetic process | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRGKIQVKR IESTTSRQVT FSKRRAGLMK KTHELSILCD AQIGLIVFSS KGKLTEYTTP 60 PLSMKEIIDR YSKMQGIHIP DNNAAAGSSM GLYNEQMYQE LARMKKETLN LELSLQRYKG 120 DDLCSVQFDE LNRIEQQLEH SVLKVRSRKF QLLHEQLDNL KRTLMSNQLQ KQAEVESQQQ 180 GIADLKLVDQ QQPLLNQFLF SREDLQLGTL PLHPHAYRLQ PAHPNLQDFG LGIPYFTSSS 240 DCNIGAGSSH VYSRFAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-18 | 1 | 84 | 1 | 82 | MEF2C |
5f28_B | 9e-18 | 1 | 84 | 1 | 82 | MEF2C |
5f28_C | 9e-18 | 1 | 84 | 1 | 82 | MEF2C |
5f28_D | 9e-18 | 1 | 84 | 1 | 82 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678441906 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843283.1 | 1e-107 | PREDICTED: MADS-box protein defh21 | ||||
Swissprot | Q8RVL4 | 2e-97 | DEF21_ANTMA; MADS-box protein defh21 | ||||
TrEMBL | S8CL11 | 1e-108 | S8CL11_9LAMI; Uncharacterized protein | ||||
STRING | Migut.C01064.1.p | 1e-107 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.3 | 1e-55 | MIKC_MADS family protein |