PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678441243
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 281aa    MW: 32362.9 Da    PI: 5.9348
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678441243genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.5e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll + +  +G g+W+t a+   ++Rt+k+c++rw++yl
        678441243 16 RGPWTLEEDNLLTQFIGSYGEGRWNTLAKLAKLRRTGKSCRLRWLNYL 63
                     89********************************************97 PP

2Myb_DNA-binding482.9e-1569112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +  E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
        678441243  69 RGNLSHHEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 112
                      788899****************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4911163IPR017930Myb domain
SuperFamilySSF466893.4E-2914110IPR009057Homeodomain-like
SMARTSM007171.1E-131565IPR001005SANT/Myb domain
PfamPF002492.5E-141663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-211770IPR009057Homeodomain-like
CDDcd001671.16E-91863No hitNo description
PROSITE profilePS5129423.93864118IPR017930Myb domain
SMARTSM007171.2E-1368116IPR001005SANT/Myb domain
PfamPF002498.9E-1469112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2271117IPR009057Homeodomain-like
CDDcd001677.77E-1073112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGSDWKSDGE GGDLRRGPWT LEEDNLLTQF IGSYGEGRWN TLAKLAKLRR TGKSCRLRWL  60
NYLKPDIKRG NLSHHEQLLI LELHSKWGNR WSKIAQHLPG RTDNEIKNYW RTRVQKQARQ  120
LKVDSNSTKF LETLRLYWMP RLREKMEQNQ SHDIYSAAAP PPFSEPEDLK NASSLTISPA  180
SQPPLFVDND HSDSSYSVKS AYLSAPETQS NENQFLQVSN EKEGEERWGD LQLLETNPGF  240
PGCEVEEIDW LAEELGRSSS SFWDSDGSVD IHMSQYKNVS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26131184108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678441243
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076599.19e-91transcription factor MYB62
SwissprotQ9C9G74e-75MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A0K1SBH13e-85A0A0K1SBH1_REHGL; R2R3-MYB protein
STRINGXP_009626235.16e-81(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-77myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]