PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678440910
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 317aa    MW: 35279.1 Da    PI: 9.1464
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678440910genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
        678440910 14 KGPWTREEDQKLLAYIEEHGHGSWRSLPAKAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding47.54.2e-1567111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++ E++ +++++++lG++ W++Ia +++ +Rt++++k++w++
        678440910  67 RGKFSAHEEKAIIRLHALLGNRWWSAIATHLP-KRTDNEIKNYWNT 111
                      89******************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-24864IPR009057Homeodomain-like
PROSITE profilePS5129425.021965IPR017930Myb domain
SuperFamilySSF466898.44E-2812109IPR009057Homeodomain-like
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002498.9E-161461IPR001005SANT/Myb domain
CDDcd001672.98E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2365117IPR009057Homeodomain-like
PROSITE profilePS5129417.11666117IPR017930Myb domain
SMARTSM007176.9E-1366115IPR001005SANT/Myb domain
PfamPF002491.3E-1367111IPR001005SANT/Myb domain
CDDcd001676.52E-1169113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGKPDSPAKE ELKKGPWTRE EDQKLLAYIE EHGHGSWRSL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SAHEEKAIIR LHALLGNRWW SAIATHLPKR TDNEIKNYWN TRLKKRLTRM  120
GIDPVTHKPK SSSGGGAQSK QAANLSHMAQ WETARLEAEA RLVRESKILS NLQFLQKVTI  180
PPLPSPPSPF QMSNATPCLD VLKVWQATAA NSCFFGAQTT LESPTSTLNF SPVSAVAAVP  240
TVTPSAGSLY DNHAATYEMD LGRFHFPDAV EDAGVPSISS DCYTMSSATA FLEQDDTKSY  300
WNELLHMVTS PMELPGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26111174108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678440910
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071274.11e-131transcription factor MYB28-like isoform X2
SwissprotQ9LE632e-92MY106_ARATH; Transcription factor MYB106
TrEMBLA0A059PRK91e-128A0A059PRK9_SALMI; MYB-related transcription factor
STRINGMigut.L01264.1.p1e-112(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.13e-87myb domain protein 16