PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678440650
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ZF-HD
Protein Properties Length: 297aa    MW: 32675.7 Da    PI: 7.7199
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678440650genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.51.2e-3185140359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                   v+Y+eCl+NhAa++Gg+a+DGCgEfmps geeg+++al+C+AC CHRnFHRrev+ 
    678440650  85 VVKYRECLRNHAAAMGGNATDGCGEFMPS-GEEGSMEALTCSACSCHRNFHRREVQG 140
                  699*************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.1E-2986138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2586142IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-2987138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.47188137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.0E-30212286IPR009057Homeodomain-like
SuperFamilySSF466895.62E-19219285IPR009057Homeodomain-like
TIGRFAMsTIGR015655.5E-27224280IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEVPSSQGEE IPIPLNSSYG GGQHGHDHLI HHDHHQPPLN HIMAPSVGGA AGPQIPSNGA  60
TPVSVATAAD EELHHHHHQH HFKRVVKYRE CLRNHAAAMG GNATDGCGEF MPSGEEGSME  120
ALTCSACSCH RNFHRREVQG EINHSSNPCE TCFHAANPRI GVGGRKLFMG HPQAIGYHGG  180
ALISARAVAP HQMIMPYSVG ASLPSESEDQ EDGCTGARPL QVVKKRFRTK FTQEQKDKML  240
SFAEKVGWKI QKQEEGVVQQ FCQEIGVKRR VLKVWMHNNK HNLSKKNPEP NPDQNQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-232252821875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678440650
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017979046.11e-116PREDICTED: zinc-finger homeodomain protein 4
SwissprotQ9M9S05e-77ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A061GFH01e-114A0A061GFH0_THECC; Homeobox protein 31
STRINGEOY257741e-115(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-78homeobox protein 31