PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678440513 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | SRS | ||||||||
Protein Properties | Length: 203aa MW: 21205.9 Da PI: 5.0839 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 83.9 | 3.9e-26 | 73 | 127 | 100 | 154 |
DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 le s+P+evsseavfrcvrv++ ddge++laYqtav+i GhvfkGiLydqG+++ 678440513 73 LELGSFPSEVSSEAVFRCVRVTANDDGEDKLAYQTAVKICGHVFKGILYDQGVDS 127 45566************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.9E-23 | 68 | 126 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 1.4E-26 | 78 | 125 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MLSASPDKAF VKDHLLFPSL VTSLLLLLLP FLLLSLHFKL SQPSFNSNSI AESISGSLAS 60 RDHSLVFSLF VGLELGSFPS EVSSEAVFRC VRVTANDDGE DKLAYQTAVK ICGHVFKGIL 120 YDQGVDSQQY LAGETSSGGG GSVSAGGAQQ LNLIPGTTSA TATSAPPNTS AAPGTSPFLD 180 PSLYPTPINS FIAGNQFFPS SRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678440513 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090405.1 | 2e-45 | protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9SD40 | 3e-33 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | S8DYK7 | 7e-47 | S8DYK7_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_010033452.1 | 1e-36 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18294 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 4e-31 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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