PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678440443 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TCP | ||||||||
Protein Properties | Length: 240aa MW: 25641.6 Da PI: 9.8089 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.7 | 2e-38 | 21 | 128 | 2 | 109 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..........k 89 a kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a+++ +++s s +++ + + 678440443 21 ANKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPATFStvSPSSTSDNNKPL--ShspapfllgkR 118 679******************************************************************77744333333333322..122344444431 PP TCP 90 aaksaakskksqksaasaln 109 + ++++ ++ 678440443 119 ----------LRPEDHEDQE 128 ..........2222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-33 | 27 | 122 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.892 | 27 | 81 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSTSPSDGPH GGAGPTIPST ANKKPPAKDR HSKVDGRGRR IRMPIICAAR VFQLTRELGH 60 KSDGQTIEWL LRQAEPSIIA ATGTGTTPAT FSTVSPSSTS DNNKPLSHSP APFLLGKRLR 120 PEDHEDQELS KDDVNAPPSS SPALGPAAGF WALPARPDFG QVWSFAPHPE MVVNNASHLT 180 HPSSLRFLQQ QQQPLTLNEA SAARVGNYLP IAQVQGHHLN LLASLSGGTP QSSEQRRGTD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678440443 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022868503.1 | 1e-102 | transcription factor TCP7-like | ||||
Refseq | XP_022868504.1 | 1e-102 | transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 2e-77 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A4D8XZT1 | 1e-100 | A0A4D8XZT1_SALSN; Transcription factor TCP21 (Protein CCA1 HIKING EXPEDITION) | ||||
TrEMBL | A0A4D8YY13 | 1e-100 | A0A4D8YY13_SALSN; Transcription factor TCP21 (Protein CCA1 HIKING EXPEDITION) | ||||
STRING | Solyc01g008230.2.1 | 9e-83 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3951 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 3e-63 | TCP family protein |