PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678440232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HSF | ||||||||
Protein Properties | Length: 107aa MW: 12154.7 Da PI: 4.3537 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 81.9 | 9.4e-26 | 26 | 84 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y++++d++++ ++sw ++g +f+v+ + ef+++vLp+yFkh+nf+SFvRQLn+Y 678440232 26 FLTKTYHLVDDPATDAVVSWGDDGATFIVWRPPEFSRDVLPNYFKHNNFSSFVRQLNTY 84 9********************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.2E-28 | 17 | 87 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.0E-23 | 22 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.49E-23 | 25 | 84 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.5E-22 | 26 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.3E-16 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.3E-16 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.3E-16 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MAALILDNLD GLFLSLESQK SVPAPFLTKT YHLVDDPATD AVVSWGDDGA TFIVWRPPEF 60 SRDVLPNYFK HNNFSSFVRQ LNTYVNEHSE SCSVFGEWVL LLWFVGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-17 | 21 | 84 | 16 | 78 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678440232 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838730.1 | 6e-44 | PREDICTED: heat stress transcription factor B-4 | ||||
Swissprot | Q6Z9C8 | 6e-36 | HFB2B_ORYSJ; Heat stress transcription factor B-2b | ||||
Swissprot | Q9C635 | 2e-36 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A4D9BF94 | 7e-43 | A0A4D9BF94_SALSN; Heat shock transcription factor, other eukaryote | ||||
STRING | evm.model.supercontig_49.32 | 1e-45 | (Carica papaya) | ||||
STRING | Migut.N02718.1.p | 2e-43 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2721 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 1e-38 | heat shock transcription factor B4 |
Publications ? help Back to Top | |||
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