PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678440013
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 234aa    MW: 25741.4 Da    PI: 8.629
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678440013genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26078.98.2e-252105198
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                +C++C+vlr++C+++C+l+  +      ++q++++++++k++G+s +++ll+a+ +   r+++ +sl+yeA+ r+ +P+yG+vg++ ++ +q +++++e 
  678440013   2 SCNGCRVLRKACPESCALRDSLrwiksDEAQANATRFLAKFYGRSGLINLLTAAGDCAvRPQICRSLLYEACGRIVNPIYGSVGLFANGDWQRCHMAVES 101
                6*********************9998667889**********************88777*************************************9998 PP

     DUF260  95 allk 98 
                +l +
  678440013 102 VLKG 105
                8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.3491108IPR004883Lateral organ boundaries, LOB
PfamPF031956.5E-202101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSCNGCRVLR KACPESCALR DSLRWIKSDE AQANATRFLA KFYGRSGLIN LLTAAGDCAV  60
RPQICRSLLY EACGRIVNPI YGSVGLFANG DWQRCHMAVE SVLKGRPLLK TITVEGDKEQ  120
QLPVSPTEAC EIRHVSKEAG VDRRVRTRKR AKKETSMRQS EIDELLSKVK LSLPGEKFTL  180
TGWDGQAAQQ TESRSPERRA PDSEGDKTSS SPSCGGSMEL ELTLGPNNLL LHCS
Cis-element ? help Back to Top
SourceLink
PlantRegMap678440013
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846047.12e-64PREDICTED: LOB domain-containing protein 42-like
SwissprotQ9ZW966e-51LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A022QR015e-63A0A022QR01_ERYGU; Uncharacterized protein
STRINGMigut.E00341.1.p6e-64(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.12e-53LOB domain-containing protein 40