PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678439875
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 315aa    MW: 35605.4 Da    PI: 9.2923
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678439875genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-07111154246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++WT+eE + l d+++++  + +  Ia +++  +t +++k+r+++
        678439875 111 KNWTKEETDELFDLCQRFDLR-FIVIADRFPYSKTVEELKDRYYS 154
                      58*******************.*********99**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.22E-6108160IPR009057Homeodomain-like
SMARTSM007174.4E-7109158IPR001005SANT/Myb domain
PfamPF162825.4E-20110159IPR032563DAMP1, SANT/Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-5111157IPR009057Homeodomain-like
CDDcd116588.68E-19113155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDAKDILGLP KNVLPTQEKK SRPPRESHRK PDGISREVYA LTGGLPPLIP AIDTTQLKRK  60
AQSENEKVAI SWKWLPFSNS ARKDDLQLYH WVRVVNGVPP TGDYSFAKYN KNWTKEETDE  120
LFDLCQRFDL RFIVIADRFP YSKTVEELKD RYYSVSRAIL IARAKSPSDV ANNPLVKEPY  180
NASQETERKH SLNLILSHTK QQERKDVEAP VEPELMATSD NEPCAAGKEN YAADAATPLN  240
LPPSTVSVSN PVSETASVAA SLRMLHVYLR SYAHAQMVEA VSSSAAIRTI KRVEQTLQDL  300
GVRFLLLHNY YPTRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678439875
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020550336.11e-158SWR1-complex protein 4 isoform X3
SwissprotQ8VZL61e-126SWC4_ARATH; SWR1-complex protein 4
TrEMBLS8EHT81e-163S8EHT8_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.D00054.1.p1e-144(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76261515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.11e-125MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]