PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678439558

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Trihelix

Protein Properties

Length: 409aa MW: 46392.4 Da PI: 7.2973

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678439558	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.5	3.5e-13	37	98	9	70
trihelix 9 aLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 a++++r++m+ ++r++ k+ lW evs+k+ + g++rs+ C e ++n+ +++++ k++ 678439558 37 AMVKIRSNMDVAFRDSGHKASLWNEVSRKLPQMGYHRSSLNCHEEFDNMFNYHRRHKDQLDL 98 7899*****************************************************99876 PP
2	trihelix	94.3	1.2e-29	317	401	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k e+ aL+ ++++++ ++ ++ k+plWeevs+ m+ g++r++k+Ckekwen+nk+yk++k+++k+r +e+s+tcpyf+ l+ 678439558 317 RWPKAEIEALVMVKTDLDFKYHDTGPKGPLWEEVSSSMKMLGYHRTAKRCKEKWENINKYYKRVKNSNKRR-AEDSKTCPYFNLLD 401 8******************************************************************98.89999***9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-7	38	101	No hit	No description
PROSITE profile	PS50090	4.426	53	86	IPR017877	Myb-like domain
SMART	SM00717	0.0046	314	376	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.899	316	374	IPR017877	Myb-like domain
CDD	cd12203	3.45E-23	316	381	No hit	No description
Pfam	PF13837	3.1E-20	317	403	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MLESSVFFEN SVGVAEEGAS GCNGGEESAG SRLPPVAMVK IRSNMDVAFR DSGHKASLWN 60 EVSRKLPQMG YHRSSLNCHE EFDNMFNYHR RHKDQLDLLG SHFSHPSTSL NQVSSYSFER 120 VPTLSNNLMT SIPGQDLCSF PCTTREGFVD FMSASTSSAS SSDNESEGGV EKKRRVTDYF 180 EKLMKQVLEK QEELQKKFLE TIEKCEKEWI AREEAWKVQE MERIKREKEI LAKERAMSVA 240 KDAAMLSFLQ HLTQITTPVK TPDMLTTLSD KPPGNLLKAL ENHSELPDGG VGESSSARVD 300 GQENSAGESR VMMSCSRWPK AEIEALVMVK TDLDFKYHDT GPKGPLWEEV SSSMKMLGYH 360 RTAKRCKEKW ENINKYYKRV KNSNKRRAED SKTCPYFNLL DSLYAKKSI

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MLESSVFFEN SVGVAEEGAS GCNGGEESAG SRLPPVAMVK IRSNMDVAFR DSGHKASLWN  60
EVSRKLPQMG YHRSSLNCHE EFDNMFNYHR RHKDQLDLLG SHFSHPSTSL NQVSSYSFER  120
VPTLSNNLMT SIPGQDLCSF PCTTREGFVD FMSASTSSAS SSDNESEGGV EKKRRVTDYF  180
EKLMKQVLEK QEELQKKFLE TIEKCEKEWI AREEAWKVQE MERIKREKEI LAKERAMSVA  240
KDAAMLSFLQ HLTQITTPVK TPDMLTTLSD KPPGNLLKAL ENHSELPDGG VGESSSARVD  300
GQENSAGESR VMMSCSRWPK AEIEALVMVK TDLDFKYHDT GPKGPLWEEV SSSMKMLGYH  360
RTAKRCKEKW ENINKYYKRV KNSNKRRAED SKTCPYFNLL DSLYAKKSI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678439558

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099803.1	1e-159	trihelix transcription factor GT-2-like
TrEMBL	A0A2G9H252	1e-146	A0A2G9H252_9LAMI; Transcription factor GT-2
STRING	XP_009626647.1	1e-113	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9794	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-56	Trihelix family protein