PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678438610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 272aa MW: 30725.4 Da PI: 6.9497 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 335.8 | 8e-103 | 2 | 271 | 104 | 373 |
GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 ea ++eer+Hi+Df+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p s+ + le +g+rLa + e++++p++f++ v d++le+L+v pgEa 678438610 2 EACKNEERIHIVDFQIAQGTQWMTLLQALAARPGGPPHVRITGIDDPMSKhaRGSGLELVGKRLAAVSEKFKIPVQFHP-VPVFAPDITLETLQVLPGEA 100 899*******************************************998888999************************.6888999************* PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 laVn+ lqlh+++desv+++++rd +L+++ksl+Pk+v++veqe+++n+++Fl rf+eal+yys++f+s+++ + r+ +eri+vE+++l+r+ivn++ace 678438610 101 LAVNFPLQLHHTPDESVDVTNPRDGLLRMIKSLNPKIVTLVEQESNTNTAPFLPRFIEALDYYSSIFESIDVMMERDRKERINVEQQCLARDIVNIIACE 200 **************************************************************************************************** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 g+er+erhe l+kW +r+++aGF+p pl++++++ ++ ll+ ++ + y++ e++g+++lgWk+r+Lvs+SaW 678438610 201 GKERVERHELLGKWTARFTMAGFRPFPLNSYVNSVIRDLLKCYS-ENYTLVERNGAMLLGWKHRNLVSASAW 271 ****************************************9998.55************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 53.044 | 1 | 253 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-100 | 2 | 271 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
AEACKNEERI HIVDFQIAQG TQWMTLLQAL AARPGGPPHV RITGIDDPMS KHARGSGLEL 60 VGKRLAAVSE KFKIPVQFHP VPVFAPDITL ETLQVLPGEA LAVNFPLQLH HTPDESVDVT 120 NPRDGLLRMI KSLNPKIVTL VEQESNTNTA PFLPRFIEAL DYYSSIFESI DVMMERDRKE 180 RINVEQQCLA RDIVNIIACE GKERVERHEL LGKWTARFTM AGFRPFPLNS YVNSVIRDLL 240 KCYSENYTLV ERNGAMLLGW KHRNLVSASA WS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-51 | 2 | 272 | 121 | 378 | Protein SCARECROW |
5b3h_D | 1e-51 | 2 | 272 | 121 | 378 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678438610 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027064982.1 | 1e-169 | scarecrow-like protein 21 | ||||
Refseq | XP_027065135.1 | 1e-170 | chitin-inducible gibberellin-responsive protein 1-like | ||||
Swissprot | Q69VG1 | 1e-148 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A068UBH1 | 1e-167 | A0A068UBH1_COFCA; Uncharacterized protein | ||||
STRING | Migut.M01823.1.p | 1e-168 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3441 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-129 | GRAS family protein |
Publications ? help Back to Top | |||
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