PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678438585 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 186aa MW: 20920.8 Da PI: 8.7986 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.9 | 6.2e-17 | 16 | 69 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++++eq+++Le+ F +++ e++ +LA++l ++ rq+ +W+qN+Ra++k+ 678438585 16 KKRLSQEQVRVLESSFDAAKKLEPERKLQLARQLAVPPRQIAIWYQNKRARWKN 69 5679************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 108.7 | 4.2e-35 | 15 | 105 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+rls+eqv++LE+sF++ +kLeperK +lar+L + prq+a+W+qn+RAR+k++ lE dyeaL+ +++a +++++Lekeve+Lr+el+ 678438585 15 HKKRLSQEQVRVLESSFDAAKKLEPERKLQLARQLAVPPRQIAIWYQNKRARWKNQSLELDYEALQLRLEAALADKKQLEKEVESLRAELR 105 69*************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.823 | 10 | 70 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-17 | 11 | 78 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.8E-13 | 12 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.12E-13 | 13 | 71 | No hit | No description |
Pfam | PF00046 | 2.3E-14 | 16 | 69 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-18 | 17 | 77 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 45 | 68 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSLQQSQKAS SSKVHKKRLS QEQVRVLESS FDAAKKLEPE RKLQLARQLA VPPRQIAIWY 60 QNKRARWKNQ SLELDYEALQ LRLEAALADK KQLEKEVESL RAELRCTQEV VFGLRGQLYA 120 PAGGFVPPPS AGWDEGTVTS CLTDDVGYAR NLRIEELYAC FMLGGSNQGH ISGGVSDRDF 180 ALGYQH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678438585 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082709.1 | 2e-61 | homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A2G9HDX0 | 2e-62 | A0A2G9HDX0_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M00776.1.p | 8e-55 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 4e-27 | homeobox protein 52 |