PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678437992
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 808aa    MW: 90312.4 Da    PI: 5.7093
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678437992genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.27e-16306340135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  678437992 306 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 340
                ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF479541.73E-17101202IPR013763Cyclin-like
Gene3DG3DSA:1.10.472.102.9E-16116196IPR013763Cyclin-like
CDDcd000436.00E-7119195No hitNo description
PfamPF001341.1E-13122202IPR006671Cyclin, N-terminal
Gene3DG3DSA:1.10.472.106.3E-4197262IPR013763Cyclin-like
SMARTSM004013.5E-10300352IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-11300344No hitNo description
CDDcd002021.67E-16305350No hitNo description
PROSITE patternPS003440306331IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2306339IPR000679Zinc finger, GATA-type
PfamPF003201.1E-13306340IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.0E-12306340IPR013088Zinc finger, NHR/GATA-type
PfamPF139192.5E-11567655IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MEPESGFSFS PGNLLLCGES VDALFLEDED FDEVGSVAEA ILRESYEEDY LEKIIEREAS  60
SVGVALGEFM DDWVQEARLD AIRYILRVCA AAPRSLMHCF QFQLFIRLLN SSLQKREILG  120
FRFQTAYVSV TYLDRFLSRG SLNEEAPWVV KLLSMVCLSL AAKMEESGVT KLWEFCLEDY  180
NFGSQMMQRV ELLVLIALDW KMGTVTPFSF IRFFSVKLCD NYFPTKSAIT ATVELILSSM  240
TDLSIRSHKP YVVAAAATLV ATGKRLPRES LQQRISSISS SLNASVVRPV EREITKYTGM  300
GKHGPCYHCG VTSTPLWRNG PPEKPVLCNA CGSRWRTKGT LANYTPLHAR VEHDDIESGY  360
PMFRTASSKS KERKVLKRKL TDDVGEVGIP HLESSHGVHK VFDEDTSNRS SSGSAISNNE  420
SCAQYGSADA SEMTGPSQAP SVWDSTVPSR KRTCFLRPRQ SPVEKLTKDL YTIWQQQQSS  480
CLYGSSEEEL LLESDKPMVS VEIGHGSVLI RHPNSTSREE ESEASSLSFD NKFLNSSLGT  540
QQFDKSANQD VPLRSVRGGG QIDNFQILAN HGSPLRLIDL QDILNFQEFS SQLTNEEQQK  600
LLQLLPAVDT VGSQDSLKMM FSSSQFRDNV LSFQKLLAEG VFDGSAFKVF TEDCRNLQKH  660
ILSDRRKSKW AEEYVQLKDL KGKSNGQSVL LEGFDNFATV DPMRMSMSKA RDGQHKKLPG  720
PNIKLKMPGA KGVKLVDKDS SLPYTKGLFP FRNDDLCSIS DLDIESYEQD LLVDVPSNIY  780
PESELLIPST GMASSSSSVF QAPVLHRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372379RKVLKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678437992
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085914.11e-160GATA transcription factor 26-like
TrEMBLM1CHE61e-158M1CHE6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000675061e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-102GATA transcription factor 26